BAC Information

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BAC

Clone NameMSMg01-075H24
Chromosome9 (Build37)
Map Location 55,985,435 - 55,985,880
singlet/doubletsinglet
Overlap geneTspan3
Upstream gene1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1
Downstream geneC230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075H24.T7 (MSMg01no075_h24.b1)MSMg01-075H24.TJ (MSMg01no075_h24.g1)
ACCAG298300AG298301
length686644
length of high quality
(start - end)
450 (55 - 504)285 (58 - 342)
definitionCHROMAT_FILE: MSMg01no075_h24.b1 PHD_FILE: MSMg01no075_h24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:11 2005CHROMAT_FILE: MSMg01no075_h24.g1 PHD_FILE: MSMg01no075_h24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACCGCAAAACATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTTGACCTAATCCCTCATAAAATTCAGAGAGTGACAA
ACATTACTTTGCCCTTTGTCATACCAAGTCCTCATGGACAGTGAAGAATC
TCAGTTATTGAATTTAAAAGGCAGGGATGGGACTTACACCTACAACTCTG
GCTCCTTTTCCCAGAGGGCACATAAGCACCAGGAGCACCAGGTAAAACCC
TGTCCTCTGCCTACCAACTCCTATTAAAGCACACTCAACAGCCCTAAAGT
TCACCCTGTGCTCTGGACTCCATATTCACACAACTACTGCAGAAGCTACT
GAAGCTTTCCTGGGGGCCATGACAGTTCTAGGAACCCCAGGGGCAACATT
GGCACCCCAAACCTTAGAGGTCAACAGACCACAAAACCCCACTGGAGACA
CTCTACTGGACCTGAAGACTGACACTGGTTGCTAGAACCCCAGTCCACTC
AGGCTACTAGATCAGACAAGAAACAGAAACCAAGGGAGAACCACCCAAAA
AACACCCATCTAATATAGATAAACTTCAGACATCAGCACCTAAACTGTAA
TAACCACAAACCCTTTCCCAGAGGCCAGGGAAAAGAACATAATCTTCTAC
TGCCAGGGCAATATGGCACTAACTACAACCCTTGAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAAA
TTCATTCAGTGAATATAATATATAATTCAATCTTGAGTATTCTGATATAG
AACCAGGAAGTGGACTTAGAAAGTGGGTATAACAAAATGTATTTATTCAT
TCATTCACCCACTGAAGGACATCTGGGCTGCTTCCAGTTTGGGTCTTGGG
AATATAGCTACCAAGATTGTCAATGTGCATCTCCTCTAAACCTGAGCTTT
CAACTCCATTTGCTAAACGTCAGGGATTAATAAGTTATATAAGATTACAT
TTTTTTTATTAATACTCTTATCTGTCAAAACGACTATCATTTTTTTGTTG
CCCACCCCTGCCTTGCATTTGGCTTCGTCAGTACATTGAGCATTAACCAC
CTACAAAAATATGTGATGGATGCTGTCCGAATGTTTTTACACTAATATAT
CACTCCTATATGCTTACTCATCTCCCTGAGTGTCTTCTTATATCTTTCGG
ACCCTTGCCCAATTTTAAATTGGCTAACTTTTTTTTACTGCTGACATTTA
AGATTTCTTTATTAACTGTCTATTAACCCCTTTTCTCGGCCCTTTTGCAA
AACATAATAATAACATGTTGAACTCACGTTTTAATTATTTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_h24.b1 MSMg01no075_h24.b1 CHROMAT_FILE:
MSMg01no075_h24.b1 PHD_FILE: MSMg01no075_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:11 2005
         (450 letters)



>mm_chr9_55985231_55986080
          Length = 850

 Score =  824 bits (426), Expect = 0.0
 Identities = 441/446 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgacctaatccctcataaaattcagagagtgacaaacattactttgccctttg 64
           |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgacccaatctctcataaaattcagagagtgacaaacattactttgccctttg 264

                                                                       
Query: 65  tcataccaagtcctcatggacagtgaagaatctcagttattgaatttaaaaggcagggat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 tcataccaagtcctcatggacagtgaagaatctcagttattgaatttaaaaggcagggac 324

                                                                       
Query: 125 gggacttacacctacaactctggctccttttcccagagggcacataagcaccaggagcac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggacttacacctacaactctggctccttttcccagagggcacataagcaccaggagcac 384

                                                                       
Query: 185 caggtaaaaccctgtcctctgcctaccaactcctattaaagcacactcaacagccctaaa 244
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taggtaaaaccctgtcctctgcctaccaactcctattaaagcacactcaacagccctaaa 444

                                                                       
Query: 245 gttcaccctgtgctctggactccatattcacacaactactgcagaagctactgaagcttt 304
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 445 gttcaccctgtgctctggactccatagtcacacaactactgcagaagctactgaagcttt 504

                                                                       
Query: 305 cctgggggccatgacagttctaggaaccccaggggcaacattggcaccccaaaccttaga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cctgggggccatgacagttctaggaaccccaggggcaacattggcaccccaaaccttaga 564

                                                                       
Query: 365 ggtcaacagaccacaaaaccccactggagacactctactggacctgaagactgacactgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ggtcaacagaccacaaaaccccactggagacactctactggacctgaagactgacactgg 624

                                     
Query: 425 ttgctagaaccccagtccactcaggc 450
           ||||||||||||||||||||||||||
Sbjct: 625 ttgctagaaccccagtccactcaggc 650


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)