BAC Information

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BAC

Clone NameMSMg01-076D24
Chromosome9 (Build37)
Map Location 16,656,592 - 16,657,045
singlet/doubletsinglet
Overlap genenone
Upstream geneMtnr1b, Fat3
Downstream geneEG434373, LOC100040074, LOC100040090, LOC244710, LOC100040508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076D24.T7 (MSMg01no076_d24.b1)MSMg01-076D24.TJ (MSMg01no076_d24.g1)
ACCAG298872AG298873
length715718
length of high quality
(start - end)
408 (38 - 445)461 (71 - 531)
definitionCHROMAT_FILE: MSMg01no076_d24.b1 PHD_FILE: MSMg01no076_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:09 2005CHROMAT_FILE: MSMg01no076_d24.g1 PHD_FILE: MSMg01no076_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAATCCGCGGAATTCTG
AAATTCTTACGCAAATGGATAGAACTAGAAAAATCATCCTGAATGAGGTA
ACCCAATCACAGAAGAACACACATGGTTTGCACTAAATGATAAGTGAATA
TTAACCCAGAAGTTCAGAATATGCAAAATACAATCCACAGACCACATAAA
GGTCAAGAAGAAGGAAGTCCACAGTGTGGGTACTTCGGCCCTTCTTAGAA
GGAGGATGAAAATACCCATGGAAGGAGATACCAGCATGCACTCTTAATAT
GTGTATGAGAATGTATGTATGCATTTAATTGTGGGTGTATTGCCTGGAGA
GGCCACAAGAGGACACTGGATTACCTGAAACTGGAGTCACACAATGTACT
GAGCTACCACTTTGATGTTGGGAACAGAAACCAGAACCTCTGCTGAGAGC
AGCGAATGCTTTTATCAACTGTGCCACACTACCAGTCTTCAAAAATAGTC
TCTTGTTATGCTTGACTGACCTATTGTAGGCTGATTTCTCTATTTGTCAA
GCTCAGATGTTATTGTCTTCTAAGCGCATATTTAGAATCTGGAACCCCGT
GTGAGAGCATCAATCTCTGTCTCTCTGTCTCTGTCTCTGGCTCTGACTCT
CTCTCTCTGTATTTCTCTCTCTCTGTGCCTTATACATCTCATTCCCTCCA
CTATCCGCGTCCCTC
ATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTACCACACAGATCATGCAAGCTCTAATT
TCCTCTACGAAGACCATGTTACCAGTTTCCATGCATTTTAAATCGGGCAT
CAGAAAAGCAGATGATTATTCCGAATTTGACAAGTCCTTACCGTTTAGCT
ATACAACAAGGTGTTACAAAATGTGCTGTTTGCACAGGAACCTACATTTT
GCAGTGAGTAACAGGTGTCACATGCTCAGCACTGATGTAGCTGACATTTT
TAATTGTGATTAGATGTACTAACTGTGGGCTGATAATTGTTTGTTAAAAG
CATTATTTTTTCTGAATTTCTGTCTGATGTTAACAAATGAGTATTGAAAA
TGATTATTGCATGAATACAATTTATTGGGCGAGAAAGCCAGACAACAAAA
TCAAAACCAGTGCCAACATTCTCTTATAGTTATCTGTGGCCTCAGGCCAG
AACTATTACCACTCATTAGCAGCCATACACAATAAACCAACCTACAAACA
CCAGTTGTTAAGTTGTTCACATATTTCAAAGATTGAAGGTCACTCTCATC
TCATATTTGCTTATGTTTGCCGACTTAAAATTTACAAAATTTACCAAGAT
CTATTTAAATCTCTCACGAACGATCTAAGAGAATGTACAACTTTAGTAAA
TTACCTATCACTGGAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_d24.g1 MSMg01no076_d24.g1 CHROMAT_FILE:
MSMg01no076_d24.g1 PHD_FILE: MSMg01no076_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:09 2005
         (461 letters)



>mm_chr9_16656450_16657312
          Length = 863

 Score =  777 bits (402), Expect = 0.0
 Identities = 444/464 (95%), Gaps = 13/464 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttac-cacacagatcatgcaagctctaatttcctctacgaagaccatgttacc--agtt 57
           ||||| |||||||||||||||||||||||||||||||| |||||||||||||||  ||||
Sbjct: 596 cttacacacacagatcatgcaagctctaatttcctctaggaagaccatgttaccagagtt 537

                                                                       
Query: 58  tccatgcattttaaatcgggcatcagaaaagcagatgattattccgaatttgacaagtcc 117
           | ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 536 ttcatgcatttgaaatcgggcatcagaaaagcagatgattattccgaatttgacgagtcc 477

                                                                       
Query: 118 ttaccgtttagctatacaacaaggtgttacaaaatgtgctgtttgcacaggaacctacat 177
           |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 476 ttaccgtttagctatagaacaaggtgttacaaaatgtgctgtttgcacaggaatctacat 417

                                                                       
Query: 178 tttgcagtgagtaacaggtgtcacatgctcagcactgatgtagctgacatttttaattgt 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tttgcagtgagtaacaggtgtcacatgctcagcactgatgtagctgacatttttaattgt 357

                                                                       
Query: 238 gattagatgtactaactgtgggctgataattgtttgttaaaagcattattttttctgaat 297
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 356 gattagatgtactaactgtgggctgataattgtttgttaaaagcatta-tttttctgaat 298

                                                                       
Query: 298 ttctgtctgatgttaacaaatgagtattgaaaatgattattgcatgaatacaatttattg 357
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 297 ttctgtctgatgttaacaaatgagtattgaaaatgattattgcatgaatataatttattg 238

                                                                       
Query: 358 ggcgagaaagccagacaacaaaatcaaaaccagtgccaacattctcttatagttatctgt 417
           ||||||||||||||||||||||||||||||||||||         |||||||||||||||
Sbjct: 237 ggcgagaaagccagacaacaaaatcaaaaccagtgc---------cttatagttatctgt 187

                                                       
Query: 418 ggcctcaggccagaactattaccactcattagcagccatacaca 461
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 ggcctcaggccagaactattaccactcattagcagccatacaca 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 863
Length adjustment: 10
Effective length of query: 451
Effective length of database: 853
Effective search space:   384703
Effective search space used:   384703
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)