Query= MSMg01no076_i16.b1 MSMg01no076_i16.b1 CHROMAT_FILE:
MSMg01no076_i16.b1 PHD_FILE: MSMg01no076_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:33 2005
(444 letters)
>mm_chr9_34326853_34327702
Length = 850
Score = 822 bits (425), Expect = 0.0
Identities = 439/447 (98%), Gaps = 6/447 (1%)
Strand = Plus / Plus
Query: 4 ggaattcctctgctggtccaccttatctctatgttacctgtacttgccacagccacagac 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctctgctggtccaccttatctctatgttacctgtacttgccacagccacagac 263
Query: 64 ctgaccaaacagaaacacgcacacgcacacgcacac------accaatggaagtaggagt 117
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 ctgaccaaacagaaacacgcacacgcacacgcacacgcacacaccaatggaagtaggagt 323
Query: 118 gaggcagaagacagaagctctccccacagatagcccccttccgaggatgaacaacagccc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gaggcagaagacagaagctctccccacagatagcccccttccgaggatgaacaacagccc 383
Query: 178 tgaaacctgccttatcactcctggtagctacagaagacatctgttgcattttacaactcc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaaacctgccttatcactcctggtagctacagaagacatctgttgcattttacaactcc 443
Query: 238 caactcctcacttcttatcccccaaacttcgttgttgttgttgttgttgttattttcttc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caactcctcacttcttatcccccaaacttcgttgttgttgttgttgttgttattttcttc 503
Query: 298 actgaaagtgcctgtgagagctaggtggtggtgccacaggtctttgatcccagcattccg 357
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 504 actgaaagtgcctgtgagagctaggtggtggtgccacaggtctttgatcccagcattcgg 563
Query: 358 aagcagaggtaggcagaggccaacttggtctacccattgacttccagggctacatggaga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aagcagaggtaggcagaggccaacttggtctacccattgacttccagggctacatggaga 623
Query: 418 aagcttgtctcataaaacaaaacaaaa 444
|||||||||||| ||||||||||||||
Sbjct: 624 aagcttgtctcaaaaaacaaaacaaaa 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 850
Length adjustment: 10
Effective length of query: 434
Effective length of database: 840
Effective search space: 364560
Effective search space used: 364560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_i16.g1 MSMg01no076_i16.g1 CHROMAT_FILE:
MSMg01no076_i16.g1 PHD_FILE: MSMg01no076_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:33 2005
(527 letters)
>mm_chr9_34468316_34469242
Length = 927
Score = 1019 bits (527), Expect = 0.0
Identities = 527/527 (100%)
Strand = Plus / Minus
Query: 1 acttcagaatcattaaaaacccgttcattagtacaaagcacctggtgccacctgtgtggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 acttcagaatcattaaaaacccgttcattagtacaaagcacctggtgccacctgtgtggg 668
Query: 61 agaaggaaataaattggtgaaacctgggacccttgcagctcagtacttctcatttatctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agaaggaaataaattggtgaaacctgggacccttgcagctcagtacttctcatttatctc 608
Query: 121 cttatcacaagccatactgccaagatgattttttttattaagaagttataaatattctgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cttatcacaagccatactgccaagatgattttttttattaagaagttataaatattctgg 548
Query: 181 gccaaaatattatctcgagattttttttgtccacccgatgtgcacagcaggtagacaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gccaaaatattatctcgagattttttttgtccacccgatgtgcacagcaggtagacaaat 488
Query: 241 ttatccaaaaatgattgaagaatgaattctcttggatttctttggaagctttctatcttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ttatccaaaaatgattgaagaatgaattctcttggatttctttggaagctttctatcttc 428
Query: 301 ttaatcatccagtctaccattaacccttcagttacttaaacctatgaacattgaaagcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttaatcatccagtctaccattaacccttcagttacttaaacctatgaacattgaaagcta 368
Query: 361 gtgtggctatgacgatgatgaagtttggtaaaggtacctctgttattagtaagtagtagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gtgtggctatgacgatgatgaagtttggtaaaggtacctctgttattagtaagtagtagg 308
Query: 421 gcccttagctgaaaaaactttttattcaaaatctacacgggaatttcttttagcccctct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gcccttagctgaaaaaactttttattcaaaatctacacgggaatttcttttagcccctct 248
Query: 481 ccttcaactgtggcccaaatttagaggattcattgtcaacacagaac 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ccttcaactgtggcccaaatttagaggattcattgtcaacacagaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
