BAC Information

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BAC

Clone NameMSMg01-076J12
Chromosome9 (Build37)
Map Location 87,507,759 - 87,507,975
singlet/doubletsinglet
Overlap genenone
Upstream geneMod1, Prss35, Snap91, C030002E08Rik, Cyb5r4, LOC666777, LOC244958, LOC100039510, 4922501C03Rik, LOC671706
Downstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076J12.T7 (MSMg01no076_j12.b1)MSMg01-076J12.TJ (MSMg01no076_j12.g1)
ACCAG299133AG299134
length703706
length of high quality
(start - end)
104 (76 - 179)224 (76 - 299)
definitionCHROMAT_FILE: MSMg01no076_j12.b1 PHD_FILE: MSMg01no076_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:37 2005CHROMAT_FILE: MSMg01no076_j12.g1 PHD_FILE: MSMg01no076_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTAGAGGATCCGCG
GAATTCTCACTTGACGAATAATAAATGGCAGAGAAGCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACTGC
AGATGCTGACGAGGATGTGGAGAAAGAGGAGCACTCCTCCGCTGTTGGTG
GGATTGCAAGCTTGCACAACCACTCTGGAAATCAGTTTGGCGGTTCCTCA
GACAACTGGACATAGTACTACCTGAGGATCCCGCAATACCTCTCCTAGGC
ATATATCCAGAAGATGTCCCAATTGGCAAGAAGGACTCATGCTCCACTAT
GTTCATAGCAGCCTTCACCATAATAGCCAGAAGTTTCCTTAACTTCTTTC
TCAGCCTGTTTATTCTTTGCGCACATAAAGGCCCCTGATCTGCTCGAGCC
TACTTTATATTCAGCGACTTCCTTGACGCCTGTTTCTCCCGCTCTACCAT
TTCCCTGTTGCCTTACTTACCGCCCCTTTACATCTACTACCACATCCTCT
GCCATTAGCGCCATTTTGACTCCCTTCCCTCCAATCCGTACCCCTTCGAT
CTCCTTCCCCCCGCCTAACGCTTTATCCCGTACCCTCTTTATCTCGCTCC
CTC
ATCAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTCCCAAAGTTCAGTTATCATCCC
TTCCTTTCACACGAGGCTTGACCTCATGTGGGCTAGCACAGACCATGGTG
AGTCAGTACTCTGGAGTTAAATATGAAGAAAACGTTGCCTCAAGTATGCT
TTGAACTTTTGTTCCCTTTCAGGTTTAAAGCTACTATAAAACGAGGGGAA
AGGTTTCTATCTGTAGGTTGTGCATATTACGGCGATAAGTAATGAGTGCC
AGGGTCACTAGTCACTCTGACATGAACTACTAGTCTGAAATTTACTGTCA
TGTAGTCTCTGAGGATGTATCATGAACAACAAGACTATTGGTTCATCTGC
AGAAGAATGGCATCACGACTTCAGTGTGGCCCTCTGCAGTCTTCTATCCT
TGTAGTCCAAAAGGTAGCTAGAATGACCACGTTCAGAGATCTCATTTCGC
ATTCGCCAAAGAACTAGAAGATGCGACCCCATAACATTGAGCTTTCGACC
CATTAACACATGTACCTGCCTTATACAGCCCCTACGGCCATGAACAAGCC
CATTATATTCCATATCTCCTCTATTAATATACACTCCTCGAACTTTTGTT
CCCCTATACGGTATTTCTAGCCTCCTGCATATAATTAAGCCATGTTAGCC
TTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_j12.g1 MSMg01no076_j12.g1 CHROMAT_FILE:
MSMg01no076_j12.g1 PHD_FILE: MSMg01no076_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:37 2005
         (224 letters)



>mm_chr9_87507553_87508176
          Length = 624

 Score =  358 bits (185), Expect = e-103
 Identities = 209/217 (96%)
 Strand = Plus / Minus

                                                                       
Query: 7   aaagttcagttatcatcccttcctttcacacgaggcttgacctcatgtgggctagcacag 66
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 423 aaaggtcagttatcatcccttcctttcacacgaggcttgacctcatgtgggctagcacaa 364

                                                                       
Query: 67  accatggtgagtcagtactctggagttaaatatgaagaaaacgttgcctcaagtatgctt 126
           ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 363 accatggggagtcagtactctggagttaaatatgaagaaaatgttgcctcaagtatgttt 304

                                                                       
Query: 127 tgaacttttgttccctttcaggtttaaagctactataaaacgaggggaaaggtttctatc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tgaacttttgttccctttcaggtttaaagctactataaaacgaggggaaaggtttctatc 244

                                                
Query: 187 tgtaggttgtgcatattacggcgataagtaatgagtg 223
           ||||||||||||| |||| || |||||||||||||||
Sbjct: 243 tgtaggttgtgcagattagggtgataagtaatgagtg 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)