BAC Information

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BAC

Clone NameMSMg01-079I02
Chromosome9 (Build37)
Map Location 98,396,495 - 98,397,120
singlet/doubletsinglet
Overlap geneRbp2
Upstream geneClstn2, LOC667298, Nmnat3, Rbp1
Downstream gene4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079I02.T7 (MSMg01no079_i02.b1)MSMg01-079I02.TJ (MSMg01no079_i02.g1)
ACCAG300569AG300570
length707707
length of high quality
(start - end)
632 (40 - 671)619 (70 - 688)
definitionCHROMAT_FILE: MSMg01no079_i02.b1 PHD_FILE: MSMg01no079_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:09 2005CHROMAT_FILE: MSMg01no079_i02.g1 PHD_FILE: MSMg01no079_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CACCTGACCAAACCGAATGGCTGAGAAGCACCTGAAAAAATGTTCAACAT
CCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTC
ACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTG
GCGAAGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCA
AGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTAGAAAATTG
GACATAGTACTACCGGAGGATCCCACAATAGCTCTCCTGGGCATATATCC
AGAAGATGTCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAG
CAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTCCCTCA
ACAGAGGAATGGATACAGAAAATGTGGTACATTTACATAATGGAGTACTA
CTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGG
ACCTGGAGGGCATCATCCTAAGTGAGGTAACCCAATCACAAAAGAACTTA
CATGATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATA
CCCAAGATACAAGATACAATTTGCCAAACACATGAAACTCAAGAAGAACA
AAGACCA
TGATGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGAGAAATAGGGGAATTTCCTAGGGACACG
TGGGACTAGGAAATGGCAGGGGTCTTCTAACAACAGGCTAACCCTTTCTT
ACTGTTCTAAATAGGGTGAGGGTGCCAGGTGCTGGTGGGAGGGGCCTTCA
TTCTGAGCAGAGCTAGATGGGACAATGGGAATATCCAAAGTGGAGAGACA
GCATCTCTCGGTCACTCGGGATCAGAGTCTTAATTGCCCTACGTGATACC
TGGTTGGACTTTCAAATGGGAAAGTACTGAGGCAGCAAAGGCCAGGTGAC
AGTGATGTATGCTTCCCCCTCCTCTGGCCTCACTTTCATGGTCTGGATGG
ACATTTATATTCCTGACCTCTATCCCAGTCGAGGACACTGAACTAACGTT
TCAGGGTGCAATCCTGGAATCACAAGCCTGACCGCAATAGCCAGGGAGGA
GTGAAGGAAGAGACAGGCAGGGGCCAGTCTAGTTCCCTTCTAAACGTGTC
CTCTGGAGGAGGAAATGGTATGGAAAAAAAAAAGAGAAAATTGCTCTTCC
ACCTGGCTTCCCCTTACTGCCTGGAAGTGTCGATGATTTGGGAATTAAGG
AGTCCAGGTTCAAAGCCCATGGAGGCCGTGCTGGACCAGCTCTCAGATTC
CCTGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_i02.g1 MSMg01no079_i02.g1 CHROMAT_FILE:
MSMg01no079_i02.g1 PHD_FILE: MSMg01no079_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:09 2005
         (619 letters)



>mm_chr9_98396304_98397323
          Length = 1020

 Score = 1069 bits (553), Expect = 0.0
 Identities = 603/633 (95%), Gaps = 24/633 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagaaataggggaatttcctagggacacgtgggactaggaaatggcaggggtcttcta 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 cagagaactaggggaatttcctagggacacgtgggactaggaaatggcaggggtcttcta 251

                                                                       
Query: 61  acaacaggctaaccctttcttactgttctaaatagggtgagggtgccaggtgctggtggg 120
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||      ||
Sbjct: 252 acaaccggctaaccctttcttactgttctaaatagggtgagggtgccaggtg------gg 305

                                                                       
Query: 121 aggggccttcattctgagcagagctagatgggacaatgggaatatccaaagtggagagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aggggccttcattctgagcagagctagatgggacaatgggaatatccaaagtggagagac 365

                                                                       
Query: 181 agcatctctc----------------ggtcactcgggatcagagtcttaattgccctacg 224
           ||||||| ||                ||||||||||||||||||||||||||||||||||
Sbjct: 366 agcatct-tcagaaacaccgtaagaaggtcactcgggatcagagtcttaattgccctacg 424

                                                                       
Query: 225 tgatacctggttggactttcaaatgggaaagtactgaggcagcaaaggccaggtgacagt 284
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 425 tgatacctggttggactttcaaatgggaaagtactgaggcagcaaaggccaggtgacaat 484

                                                                       
Query: 285 gatgtatgcttccccctcctctggcctcactttcatggtctggatggacatttatattcc 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gatgtatgcttccccctcctctggcctcactttcatggtctggatggacatttatattcc 544

                                                                       
Query: 345 tgacctctatcccagtcgaggacactgaactaacgtttcagggtgcaatcctggaatcac 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 545 tgacctctatcccagtcgaggacactgaactaacgtttcagggtgcaatcccggaatcac 604

                                                                       
Query: 405 aagcctgaccgcaatagccagggaggagtgaaggaagagacaggcaggggccagtctagt 464
           |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 605 aagcctgatcgcaatagccagggaggagtgaaggaagagacaggcaggggccagtctaat 664

                                                                       
Query: 465 tcccttctaaacgtgtcctctggaggaggaaatggtatggaaaaaaaaaa-gagaaaatt 523
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 665 tcccttctaaacgtgtcctctggaggaggaaatggtatggaaaaaaaaaaagagaaaatt 724

                                                                       
Query: 524 gctcttccacctggcttccccttactgcctggaagtgtcgatgatttgggaattaaggag 583
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 gctcttccacctggcttccccttactgcctggaagtgtcgatgatttgggaattaaggag 784

                                            
Query: 584 tccaggttcaaagcccatggaggccgtgctgga 616
           |||||||||||||||||||||||||||||||||
Sbjct: 785 tccaggttcaaagcccatggaggccgtgctgga 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space:   615090
Effective search space used:   615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)