BAC Information

Click to search

BAC

Clone NameMSMg01-079L12
Chromosome9 (Build37)
Map Location 78,038,833 - 78,039,491
singlet/doubletsinglet
Overlap genenone
Upstream gene2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik
Downstream geneGsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079L12.T7 (MSMg01no079_l12.b1)MSMg01-079L12.TJ (MSMg01no079_l12.g1)
ACCAG300732AG300733
length719719
length of high quality
(start - end)
476 (58 - 533)654 (66 - 719)
definitionCHROMAT_FILE: MSMg01no079_l12.b1 PHD_FILE: MSMg01no079_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:25 2005CHROMAT_FILE: MSMg01no079_l12.g1 PHD_FILE: MSMg01no079_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGATCCGCGGAATTCCCATC
AGATACCTAATCTGTAGCCCTTGTTAAACTGTTTTTTTTTTTTTTTTTTT
TTTTAAAAAACGCCCTATCGGGGCTGGAGAGATGGCTCAGCAGTTAAGAA
CACTGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATG
GTGGCTCACAACCATCTGTAATGAGGCTAACGCCCTCTTCTGGTGCATCT
GAAGACAGCTACAGTGTACTTATGTATAATAATAAATAAATCTTTAAAAA
AAAAAAAAAGGCAGCCGAGTGTGGTGGCACACGCCTTTAATCCCAGCACT
GGGGAGGCAGAAGCAGGAAGATTTCTGAGTTCGAGGCCAGCCTGGTCTAC
AAAGTGAGTTCCGGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCTAA
AAACCTAAAAAAAAAAAAAAAAAAAAAAAGCCCTATCATTACAAGAGAAC
TAATGATTTGGTATGGGATCAATAGCAAATGTGTAAGTGTGTGCGGGCTG
AGGGGATCACTAATTATGCTACCACAGCTGTATTATACACTCCTGAGGAG
ACATCAACCAAAGCAGAAAACCACGTGACTTTGGGCCACTACAACCACAG
TCACCAACAGTTGCAATCTGTACCTGCTCTGGAGCGCTTTCCTTCTAAAA
GGCAATTCCCACTTCCTAA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXATTGTATTCATTGCCAACAAAAGACAGTAGAGAGG
AATCAGCGACTGGGAGCATCGTGCTGTGGTCCATTCTTGTGATGCTAAAA
TAGACACTCAAGACTTTATTTTTGAAAACAAATTAGAGACGTACAGTTCT
GGAGGTTGGGCAAGCCAAAATTGAGGGGCTTTCTTTCACTTGCTGAGGAT
GGGGTAAAATAAAAGAAAAAAAAAAGTGTGCCCTCCCTTGACGAGAGAGA
AAGCGGCAAGCTCGTGCATTCACCTTAGGGGTGGACTCCCGATGAATGGG
AAACTTTGCCCCCTCCCTCTCTTTCTCCTTAAAGAATTTTTTCCCCTTTC
ATTTTACCCTGTAGAATGGGGCAGATGGTTAAAAAGGCATGACCGCCATT
CCTGGAACAGTCATAGGCAGCCCATCAAGAACCGTTTGTAGTTAAGGTTA
CAGGTGGGGCATAGCTCTGCCTTTGAGAAACAGAGGTATGAACAGGAATA
AACCTAGTTTGTCTTTACTGTAGGACGGCTTTGAAGCCTAAAACGGAGGC
AAGCTAGTTCTTCAGTACCTAACCCGCTCCTCAGTGACATTAATTCACTC
GTGACAGCGGAGCCCTCATCCACCTTATCACCTCTTTATAAGTGCTGCTC
CTCAAACCAGTTGCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_l12.g1 MSMg01no079_l12.g1 CHROMAT_FILE:
MSMg01no079_l12.g1 PHD_FILE: MSMg01no079_l12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:25 2005
         (654 letters)



>mm_chr9_78038760_78039813
          Length = 1054

 Score = 1216 bits (629), Expect = 0.0
 Identities = 649/659 (98%), Gaps = 7/659 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   attgtattcattgccaacaaaag-acagtagagaggaatcagcgactgggagcatcgtgc 59
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 732 attgtattcattgccaacaaaagtacagtagagaggaatcagcgactgggagcatcgtgc 673

                                                                       
Query: 60  tgtggtccattcttgtgatgctaaaatagacactcaagactttatttttgaaaacaaatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgtggtccattcttgtgatgctaaaatagacactcaagactttatttttgaaaacaaatt 613

                                                                       
Query: 120 agagacgtacagttctggaggttgggcaagccaaaattgaggggctttctttcacttgct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 agagacgtacagttctggaggttgggcaagccaaaattgaggggctttctttcacttgct 553

                                                                       
Query: 180 gaggatggggtaaaataaaagaaaaaaaaaagtgtgccctcccttgacgagagagaaagc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 gaggatggggtaaaataaaagaaaaaaaaaagtgtgccctcccttgacgagagagaaagc 493

                                                                       
Query: 240 ggcaagctcgtgcattcaccttaggggtggactcccgatgaatgggaaactttgccccct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggcaagctcgtgcattcaccttaggggtggactcccgatgaatgggaaactttgccccct 433

                                                                       
Query: 300 ccctctctttctccttaaagaattttttcccctttcattttaccctgtagaatggggcag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ccctctctttctccttaaagaattttttcccctttcattttaccctgtagaatggggcag 373

                                                                       
Query: 360 atggttaaaaaggcatgaccgccattcctggaacagtcataggcagcccatcaagaaccg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 atggttaaaaaggcatgaccgccattcctggaacagtcataggcagcccatcaagaaccg 313

                                                                       
Query: 420 tttgtagttaaggttacaggtggggcatagctctgcctttgagaaacagaggt------a 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||      |
Sbjct: 312 tttgtagttaaggttacaggtggggcatagctctgcctttgagaaacagaggtacagtca 253

                                                                       
Query: 474 tgaacaggaataaacctagtttgtctttactgtaggacggctttgaagcctaaaacggag 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 252 tgaacaggaataaacctagtttgtctttactgtaggacggctttgaagcctaaaactgag 193

                                                                       
Query: 534 gcaagctagttcttcagtacctaacccgctcctcagtgacattaattcactcgtgacagc 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gcaagctagttcttcagtacctaacccgctcctcagtgacattaattcactcgtgacagc 133

                                                                      
Query: 594 ggagccctcatccaccttatcacctctttataagtgctgctcctcaaaccagttgcccc 652
           |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct: 132 ggagccctcatccaccttatcacctctttaaaagtgctgcccctcaaaccagttgcccc 74


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)