BAC Information

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BAC

Clone NameMSMg01-080H05
Chromosome9 (Build37)
Map Location 55,985,460 - 55,985,783
singlet/doubletsinglet
Overlap geneTspan3
Upstream gene1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1
Downstream geneC230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080H05.T7 (MSMg01no080_h05.b1)MSMg01-080H05.TJ (MSMg01no080_h05.g1)
ACCAG301289AG301290
length697697
length of high quality
(start - end)
324 (68 - 391)214 (71 - 284)
definitionCHROMAT_FILE: MSMg01no080_h05.b1 PHD_FILE: MSMg01no080_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:21 2005CHROMAT_FILE: MSMg01no080_h05.g1 PHD_FILE: MSMg01no080_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATAATTGCGGCGCTAAACGACTCCTATATCCAGAGAACCGCGGAATTCT
TGACCCTTCCCCTCAAAAATTCAGAGAGCGACAAACATTACTTTGCCCTT
TGTCATACCAAGTCCTCATGGACAGTGAAGAATCTCAGTTATTGAATTTA
AAAGGCAGGGATGGGACTTACACCTACAACTCTGGCTCCTTTTCCCAGAG
GGCACATAAGCACCAGGAGCACCAGGTAAAACCCTGTCCTCTGCCTACCA
ACTCCTATTAAAGCACACTCAACAGCCCTAAAGTTCACCCTGTGCTCTGG
ACTCCATATTCACACTACTACTGCAGAAGCTACTGAAGCTTTCCTGGGGG
CCATGACAGTTCTAGGAACCCCTGGGGCAACATTGGCACCCCAAACCCTA
CAGGTCAACCACCCCCCAAAACCCCAATGGAGACACTCTACTGGACCTGA
AGACTGACACTGGTTGCTAGAACCCCAGCCCACTCAGGCTACTACATCAG
ACCTGAACCCTACCCAAGGGAGAATCCCCCTTTACCCCCCCTTCTAACCC
CAGATAACCTCAGCAATCAACATCTTAACTGCTAACTACCCCAAACCTTT
TCCCAGAGGTCCGTCGAAAGATCCGATTCCTCAACAGTTCAGTGCAAAAT
GGCTCCACTACCTACCCCGACTCTTTTCCACTATCCAACGTCACGAA
TTGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCAGTGAATATAATATATAATTCAATCT
TGAGTATTCTGATATATAAATAGGAAGTGGACTTAGAAAGTGGGTATAAC
AAAATGTATTTATTCATTCATTCACCCACTGAAGGACATCTGGGCTGCTT
CCAGTTTGGGTCTTGGGAATATAGCTACCAAGATTGTCAATGTGTATCTC
CTCTAAACCTGAGCTTTCAACTCCATTTGCTAAACGTCCGGGATTAATAA
GTTATATAAGATTACATTCCTTTTATTAATACTCTTACCTGTCAAAACGA
CTATCATTCTACTGTTGCCCATCCTTGCCTTGCATTTGGCTTCGTCAGTA
CATTGAGCATTACCCACTTTCATCAATTATGTGATGGATGCTGTCCCAAT
GTTTCTACCCAATATAGCACTCCTATCTGCTCATTCACTCCCTGCGCGTC
TTCTTATTTCTTCAGGACCCTTTGCCCACTTTTAACTTGCATAACTCCTT
TTTATCGTCGAGAGGTAACAGTTCTCTATAACCACGCTAATAACCCCTTT
TTTTGCGTTTCCTTGTACCCCCTTTATATTACCCCCCCCATTTCTAAGTC
ATACCCCCCCTACTATACTCTTGACCATCAACAACCGCCCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_h05.b1 MSMg01no080_h05.b1 CHROMAT_FILE:
MSMg01no080_h05.b1 PHD_FILE: MSMg01no080_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:21 2005
         (324 letters)



>mm_chr9_55985260_55985983
          Length = 724

 Score =  580 bits (300), Expect = e-170
 Identities = 318/324 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcagagagcgacaaacattactttgccctttgtcataccaagtcctcatggacagtg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcagagagtgacaaacattactttgccctttgtcataccaagtcctcatggacagtg 260

                                                                       
Query: 61  aagaatctcagttattgaatttaaaaggcagggatgggacttacacctacaactctggct 120
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 aagaatctcagttattgaatttaaaaggcagggacgggacttacacctacaactctggct 320

                                                                       
Query: 121 ccttttcccagagggcacataagcaccaggagcaccaggtaaaaccctgtcctctgccta 180
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ccttttcccagagggcacataagcaccaggagcactaggtaaaaccctgtcctctgccta 380

                                                                       
Query: 181 ccaactcctattaaagcacactcaacagccctaaagttcaccctgtgctctggactccat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaactcctattaaagcacactcaacagccctaaagttcaccctgtgctctggactccat 440

                                                                       
Query: 241 attcacactactactgcagaagctactgaagctttcctgggggccatgacagttctagga 300
           | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtcacacaactactgcagaagctactgaagctttcctgggggccatgacagttctagga 500

                                   
Query: 301 acccctggggcaacattggcaccc 324
           ||||| ||||||||||||||||||
Sbjct: 501 accccaggggcaacattggcaccc 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 724
Length adjustment: 9
Effective length of query: 315
Effective length of database: 715
Effective search space:   225225
Effective search space used:   225225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)