Query= MSMg01no080_j08.b1 MSMg01no080_j08.b1 CHROMAT_FILE:
MSMg01no080_j08.b1 PHD_FILE: MSMg01no080_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:32 2005
(257 letters)
>mm_chr9_15521170_15521827
Length = 658
Score = 429 bits (222), Expect = e-125
Identities = 243/250 (97%), Gaps = 1/250 (0%)
Strand = Plus / Minus
Query: 7 ggaattctcagtcttc-ctcaaaatgtagtatacaaaataccaattctcacgcctccttt 65
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 ggaattctcagtcttcaatcaaaatgtagtatacaaaataccaattctcacgcctccttt 397
Query: 66 gtttgtgttgctctccacccctcctacattcctctcctttcctcctcgtgctccttctct 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gtttgtgttgctctccacccctcctacattcctctcctttcctcctcgtgctccttctct 337
Query: 126 tccctgcacgagcctctcttcggcttcaccatcagggtgtgaggagtctctgccctgtct 185
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||
Sbjct: 336 tccctgcacgagcctctcttcgacttcaccatcagggtgtgaggagcctctgccctgcct 277
Query: 186 tctctcctctgtaagcaatctttgacaaggctacccctcagtcctgctaccgataaaatt 245
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 276 tctctcctctgtaagcaatcatagacaaggctacccctcagtcctgctaccgataaaatt 217
Query: 246 cctttcctgg 255
||||||||||
Sbjct: 216 cctttcctgg 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 257
Length of database: 658
Length adjustment: 9
Effective length of query: 248
Effective length of database: 649
Effective search space: 160952
Effective search space used: 160952
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no080_j08.g1 MSMg01no080_j08.g1 CHROMAT_FILE:
MSMg01no080_j08.g1 PHD_FILE: MSMg01no080_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:32 2005
(195 letters)
>mm_chr9_15336009_15336605
Length = 597
Score = 335 bits (173), Expect = 1e-96
Identities = 189/195 (96%), Gaps = 2/195 (1%)
Strand = Plus / Plus
Query: 1 ttctctgtcttcatctccaggtccagccctgaaggtgggttgagccccagtttctttatc 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 201 ttctctgtcttcatctccaggtccagccctgaaggtggactgagccccagtttcttcatc 260
Query: 61 aagaagggcccacgtagagttttggggataggcagttgctattctttttaaa--aaacta 118
|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aagaagggcccatgtagagttttggggataggcagttgctattctttttaaagaaaacta 320
Query: 119 caggcagtccctcgttcccccttcctttttttatgtatctgcatcgtctggctctataat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggcagtccctcgttcccccttcctttttttatgtatctgcatcgtctggctctataat 380
Query: 179 tacttactatacttt 193
|||||||||||||||
Sbjct: 381 tacttactatacttt 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 597
Length adjustment: 8
Effective length of query: 187
Effective length of database: 589
Effective search space: 110143
Effective search space used: 110143
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
