BAC Information

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BAC

Clone NameMSMg01-080K17
Chromosome9 (Build37)
Map Location 57,333,584 - 57,333,896
singlet/doubletsinglet
Overlap genenone
Upstream geneHmg20a, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603
Downstream geneRpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080K17.T7 (MSMg01no080_k17.b1)MSMg01-080K17.TJ (MSMg01no080_k17.g1)
ACCAG301451AG301452
length717723
length of high quality
(start - end)
463 (54 - 516)340 (64 - 403)
definitionCHROMAT_FILE: MSMg01no080_k17.b1 PHD_FILE: MSMg01no080_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:39 2005CHROMAT_FILE: MSMg01no080_k17.g1 PHD_FILE: MSMg01no080_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAGACACCCCAAGGACAAGTTTTCAGCACAAAGATTTATTTGTCCCAG
AGGGACAAAGGTCAGAGAATAAGAGACAGAGACAAGAATAGAAGATGAGG
GAAAAGGGGAAGGGAACAAGGGAGGGAGTTCGAGAGGAGATAGATATGCC
CTTAATAAAAAGTTGTTTTATAAAAGTAAAGGGGGAAACCCTATGTCAGA
ATGCCAATGTTAATTTTAATTGGGTATGTCAATTGGGTGACCAAAGAGGG
GCTTTTGATTGCTGGACTTTGATATCTGGGCCGAGGCAGTCAGCCTCAGA
AGGAAGAGGAAGTGGCCAATAGGGAATAATAGACTTGGTGGCTAGTTTAG
GAATGTAATCTAACCATTTTTTTTTGTTTTTTTTGTTTTTTTAGCAAGAA
TGGGGAGAAGAGCAAGGCCTGCCAGAGCCATGCTTGTCACACTTGGGCTA
GCTAGAGTCCTTTTGGGGGGTGTGTGTTTGTGCATGTGGACTTGCAAACC
TCCTTGCTTGCCTCAGGATAGGATACTCTTCCCACCTGACCTTATGGTGC
CTATGAGAGAACCTCACCTGTTGTTCATACTTGTCTCCCTGCCTTCAAAG
ATGTGCTCGTATTTCTTGGAAGGCAGAATCCAGGGGAGGCGTTGGCAAAT
AGTCTATTGCGAGGTTA
GTGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXCATGACCAGAGTTACTGGCTGGGCTGCAGAACACGAT
GGTGATTAGGGTTGGTTGTGTGTAAGCCTGCGAGCTGCCTAGTGCACTTC
TGATTAAAGGCGAAGTCGAAGCAACTTGATGGTGGAGAATTAGCTCTGCA
AGTAGCGATCGCTTAGCTTGCATGCCCCCTAGTGGTCGACTATGGAAACT
GCTAGTAGGGGGAACAAGGTGGATGTTGAATAAAGTAGGAGGTAAGCTTG
TTCTTGTTTTCTATATTCCTGCTGTTCATAGATCACTCTCTCTCTCTTTT
ATTAAATGAAAGAAGTCTTACTGGGTTATGGTTAACATACAGTAAAATGC
ACTTATCCCCCGCTGTTGTTGTTGTTGTTGTTTTGAATCAGAGTCTCTTA
TACCCCCCCCTGTTCCACACTCCCCTTTGCCATCACTGATTCTTCTGCCT
CTTCTCCTTGACTGTTTGCTTTCACCCGTTTTTTATACTACCCCTGCCCT
TCCCCTTTTTTTACCCACCTTTCTCTCCCCCCCTTTTTTTTCCGGACCTT
TCGCACTACCCTCCCCCCCTTCCCCCCCTTTTTTATTTTCCCCCCCCCTT
TTTCCCTTTTCTTATTATTTTCCCCCTATCCTTCCTTATTTTTTTCTTTT
TTCTTTCTCCCCCCTCCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_k17.g1 MSMg01no080_k17.g1 CHROMAT_FILE:
MSMg01no080_k17.g1 PHD_FILE: MSMg01no080_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:39 2005
         (340 letters)



>mm_chr9_57333384_57334123
          Length = 740

 Score =  590 bits (305), Expect = e-173
 Identities = 311/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgaccagagttactggctgggctgcagaacacgatggtgattagggttggttgtgtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 catgaccagagttactggctgggctgcagaacacgatggtgattagggttggttgtgtgt 454

                                                                       
Query: 61  aagcctgcgagctgcctagtgcacttctgattaaaggcgaagtcgaagcaacttgatggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aagcctgcgagctgcctagtgcacttctgattaaaggcgaagtcgaagcaacttgatggt 394

                                                                       
Query: 121 ggagaattagctctgcaagtagcgatcgcttagcttgcatgccccctagtggtcgactat 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 393 ggagaattagctctgcaagtagcgattgcttagcttgcatgccccctagtggtcgactat 334

                                                                       
Query: 181 ggaaactgctagtagggggaacaaggtggatgttgaataaagtaggaggtaagcttgttc 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gggaactgctagtagggggaacaaggtggatgttgaataaagtaggaggtaagcttgttc 274

                                                                       
Query: 241 ttgttttctatattcctgctgttcatagatcactctctctctcttttattaaatgaaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttgttttctatattcctgctgttcatagatcactctctctctcttttattaaatgaaaga 214

                        
Query: 301 agtcttactgggt 313
           |||||||||||||
Sbjct: 213 agtcttactgggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)