BAC Information

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BAC

Clone NameMSMg01-080K21
Chromosome9 (Build37)
Map Location 29,351,529 - 29,351,980
singlet/doubletsinglet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080K21.T7 (MSMg01no080_k21.b1)MSMg01-080K21.TJ (MSMg01no080_k21.g1)
ACCAG301459AG301460
length714718
length of high quality
(start - end)
276 (96 - 371)453 (66 - 518)
definitionCHROMAT_FILE: MSMg01no080_k21.b1 PHD_FILE: MSMg01no080_k21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:40 2005CHROMAT_FILE: MSMg01no080_k21.g1 PHD_FILE: MSMg01no080_k21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCTATACGACTCCTATATTCCAACAATCCGCGNAATTCCTAA
NNCTGTTCCCCTGNCTANTTCANTGTGCATGNGTCAAATGGCANGTGACA
ACTGGCACCCAAGGCTATAATCTCCATATACACTTATCATGGCATGAACA
TACAAATGCATACATGCACACACTGAAAATTATGNCCCTATATGTACATA
AAGTACATGCATTTGATATATGCATATTCTCAATTAAATATATTGAACCA
TAATTCTGCANCAATTCTTCATAAACAAAGGCTAGGAAAATCAACAANGA
AGCCTTGAGTTTCACTCTGGTCTTAAATGGANAAAGTCCAAATTTCCAAT
CTTGGCCCAAAAGTTAACATTTTTAANCTGTCCTTTTTTTGTCTGTAAAA
ATGAATAATCACCTTTATGTGTTCTTCTGGAACATGATCANCATGACCCA
CCACCATGCGAAACTCCCTTGATATATAAACCTCCTTTTAATTGTTTGCC
CTTGTACTAATAATAACAAAGCNCNNTTACTACACTTGTTCTGTACTGCT
CACCCTCCTTGTGNAATTAAAACCCCTTTAAAAAGACACAAACCCATGTT
TCTCTTCCTCTCCCCCCCCCCNCNCCTCAAACACCACCCCCCCTTNCAAC
CTGAACTTTAATTTATGGGATAGAAGTGCTGCNNCTCNCTATTNTTTTNT
TCGTCCTATTGTTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGGGATAGAGCTACACAGGAGCTTGGGCAGGGAAG
ATGTAATGAGAAGGACACACAGGTAACCAGCCATGTGGGGGAAAGTAGGT
TAAAAATAAATGGGCTATCTTTAGTTGTGATCTAGTCAGAGAAGTGACTA
GCTGTATGGCCAAGGTATCTGTAAATATATTTTGAGTCTCAGTTTTATTT
CTGGGAGCATGGAGCTGGGAGGAAGAACAGGGACCTAACCTCTACTTTTA
ATGGTACCAGGAACTGGTTCTACATTCTTTAACTTAAAGCTTATGTCAGT
TTTATTAAATATACATTGCCATTCACAGTTCTGGATGAATAGCTCAAGGA
TTAGTGAGATTTAATATCTTGTTTCAGATTAATCAATTTGAATGCAGAAC
ATCACTGCAAACTCTGAGTATCTTCTGAAGGTCTCTTTACTTGATAGTTG
GTTTGCTCTTCTATTTGATCAGTTACCATTCATCCAATAAGCTATTCATC
ACTACCAGTTATACTATGAAAGCTAAGATCTACTGTATTTGCTAAGGTTT
TTTTTTTTTTTTGCCTTTTTTTCTGCTTTTTTTTTTGCCTCCCCCCTTGT
TCCCTCCCTTTTTTTATCCCCCTATCCTTCCCCTTTTTTTATCCTTATCC
TATTCCCCCCCCTCCCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_k21.g1 MSMg01no080_k21.g1 CHROMAT_FILE:
MSMg01no080_k21.g1 PHD_FILE: MSMg01no080_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:40 2005
         (453 letters)



>mm_chr9_29351329_29352181
          Length = 853

 Score =  874 bits (452), Expect = 0.0
 Identities = 452/452 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgggatagagctacacaggagcttgggcagggaagatgtaatgagaaggacacacaggta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgggatagagctacacaggagcttgggcagggaagatgtaatgagaaggacacacaggta 260

                                                                       
Query: 61  accagccatgtgggggaaagtaggttaaaaataaatgggctatctttagttgtgatctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accagccatgtgggggaaagtaggttaaaaataaatgggctatctttagttgtgatctag 320

                                                                       
Query: 121 tcagagaagtgactagctgtatggccaaggtatctgtaaatatattttgagtctcagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcagagaagtgactagctgtatggccaaggtatctgtaaatatattttgagtctcagttt 380

                                                                       
Query: 181 tatttctgggagcatggagctgggaggaagaacagggacctaacctctacttttaatggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttctgggagcatggagctgggaggaagaacagggacctaacctctacttttaatggt 440

                                                                       
Query: 241 accaggaactggttctacattctttaacttaaagcttatgtcagttttattaaatataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 accaggaactggttctacattctttaacttaaagcttatgtcagttttattaaatataca 500

                                                                       
Query: 301 ttgccattcacagttctggatgaatagctcaaggattagtgagatttaatatcttgtttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgccattcacagttctggatgaatagctcaaggattagtgagatttaatatcttgtttc 560

                                                                       
Query: 361 agattaatcaatttgaatgcagaacatcactgcaaactctgagtatcttctgaaggtctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agattaatcaatttgaatgcagaacatcactgcaaactctgagtatcttctgaaggtctc 620

                                           
Query: 421 tttacttgatagttggtttgctcttctatttg 452
           ||||||||||||||||||||||||||||||||
Sbjct: 621 tttacttgatagttggtttgctcttctatttg 652


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 453
Length of database: 853
Length adjustment: 10
Effective length of query: 443
Effective length of database: 843
Effective search space:   373449
Effective search space used:   373449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)