This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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BAC name
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Search Result
BAC
Clone Name
MSMg01-080K21
Chromosome
9 (Build37)
Map Location
29,351,529 - 29,351,980
singlet/doublet
singlet
Overlap gene
Hnt
Upstream gene
Opcml
,
LOC625222
Downstream gene
Snx19
,
LOC666478
Link
Open Mouse BAC browser
Click to get alignment info.
name
Opcml
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:330908
MGI:97397
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Hnt
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:235106
MGI:2446259
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC625222
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:625222
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
name
Snx19
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:102607
MGI:1921581
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC666478
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:666478
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
Opcml
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130550
GeneID:330908
MGI:97397
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: opioid binding protein/cell adhesion molecule-like
transcript_id
: NM_177906.4
name
Hnt
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130034
GeneID:235106
MGI:2446259
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: neurotrimin
transcript_id
: NM_172290.3
name
LOC625222
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149259886
GeneID:625222
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs
product
: hypothetical protein LOC625222
transcript_id
: XM_001477616.1
name
Snx19
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130542
GeneID:102607
MGI:1921581
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: sorting nexin 19
transcript_id
: NM_028874.2
name
Opcml
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51092272
CCDS:CCDS22942.1
GeneID:330908
MGI:97397
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO_function
: GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
note
: opioid binding cell adhesion molecule
product
: opioid binding protein/cell adhesion molecule-like
protein_id
: NP_808574.2
name
Hnt
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:31982044
CCDS:CCDS22943.1
GeneID:235106
MGI:2446259
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0048503 - GPI anchor binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007155 - cell adhesion [Evidence IEA]
codon_start
: 1
product
: neurotrimin
protein_id
: NP_758494.2
name
LOC625222
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149259887
GeneID:625222
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001477666.1
name
Snx19
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:39930455
CCDS:CCDS22944.1
GeneID:102607
MGI:1921581
definition
GO_function
: GO:0035091 - phosphoinositide binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO_process
: GO:0007242 - intracellular signaling cascade [Evidence IEA]
codon_start
: 1
product
: sorting nexin 19
protein_id
: NP_083150.1
name
LOC666478
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:666478
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-386I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386I08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-138J10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-218P14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-139H05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-102B21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-486F16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057A08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-401N08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-128K05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-189I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-492C09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-203E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-455K08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-513K06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-393B15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-319O05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-344F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-101H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-183N02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-134M17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-145D15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-101M09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-429K02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-409F18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-425D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-543D07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-384E06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-514F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125H05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-188A15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-189J03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-520K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-495B01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-290A14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-266N01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-537N09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-428C11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-060A22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-295F04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-045K09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-400E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-271P05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-218C14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-204P10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-116G01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-089O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-060I22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-433C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-056F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-354D03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-127A01
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-529A07
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-383C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-373F12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-268A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-368B18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-125C18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-080K21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-083E06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439G23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-423H23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-460D22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-311N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-413M19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-357A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-480A09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-327P01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-430E23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-406P11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-052I04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-447G15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-090B24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-481H18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-466F18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-216D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439G01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-383I20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-428F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-148H05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-328H14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-442J14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-189N24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-366M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-525I07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-349F23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-356C19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-470D22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-544I01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-152O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-072B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-215K16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-351B01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-121D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-063L16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-418B16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-443A05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-236O19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519A14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-117M20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-469B16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-130M12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-412O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-106D04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-313H03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-306C18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-358B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-048L20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-439A04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-473K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-133N05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-457H19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-049I09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-384B03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-474L13
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-225E22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-013C10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-003I10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-037A23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-126M20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-065L18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-187B02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-164G02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-191P21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-318L09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-283E22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-123N24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-150B01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-115G08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-060P18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-110J18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-154A01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-239O14
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-091G14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-212C13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-018P03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-169K12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-238I02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-234L09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-310H09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-338P12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-284F06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-038F09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-125H08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-284K19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-299G21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-082E09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-261F15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-014E20
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-168G21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-339D23
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-283H15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-085I10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-161G17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-161G19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-332N14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-014H15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-096K18
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-299C08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-219P11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-282O19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-217O06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-230G13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-180N15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-265E23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-191C02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-070O24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-093O06
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-012N18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-143K07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-337P02
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-126J12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-268C21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-312H23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-143D07
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-046J08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-124E15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-077F10
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-296K16
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-343G24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-288A15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-122C22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-313G08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-199M15
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-028M08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-126C18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-170H13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-270P08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-157G23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-305B21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-168J08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-180C24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-154A23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-007M07
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-269P19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-306C01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-296M11
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-189G19
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-030B05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-174O17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-222A09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-326A13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-348P22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-100G06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-005F11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-101O17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-242I23
singlet/doublet
doublet
plural/unique
unique
