BAC Information

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BAC

Clone NameMSMg01-080N08
Chromosome9 (Build37)
Map Location 27,625,386 - 27,625,571
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneGlb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080N08.T7 (MSMg01no080_n08.b1)MSMg01-080N08.TJ (MSMg01no080_n08.g1)
ACCAG301576AG301577
length715712
length of high quality
(start - end)
205 (44 - 248)37 (81 - 117)
definitionCHROMAT_FILE: MSMg01no080_n08.b1 PHD_FILE: MSMg01no080_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:51 2005CHROMAT_FILE: MSMg01no080_n08.g1 PHD_FILE: MSMg01no080_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTATTTTCCAAAACTAATAGTATGAATATGTGTGTGGATAATATAGTAA
ATATTTTATACACATATTATTATGTTCTATACTTTATATAACCTATTATA
GATTAATAATTATATACATTGTCCAAATATTCTGATTGTGTAATATTAAA
TATATAAACAACATGTATTATAAATTTATTAAGTCAGCTTCTGTTAAAAT
AGTAATAATAGCTGAATTACACACGAGAGGTTCGAAACCTATGGTTACTC
GGAGTTTGAATCATTATGCCTCATCTATTGTATCAGTCCTGCACTGACTG
TCTCTGACTGCTGAGGTTGCCAATCCTCGTGGCTGCTCCTTCCACCAGGC
TAGATTTCTCACCAGCATTTAACCTGTTTTAAAAAACTGAATAGTTTCTA
CAGATTTACTACCGGTCCCTTGTCCACATGCACCCCTGCAACCTTTTACT
CTTGCACTATGATCAAAAATATGCTCCAACCGATTTGTGAAACATTAGCG
CATTATAACGTTACCTATATTTCCCCTCCTATCATGCCCCTTTTTACCCG
AAATGTCTGCCATATCGCCTCCCCCGTTCCGTTTATGTTTTTTCCCACCA
CCTTCCCCCCATTCTCTATTTTTTTCTCCCGATTTTCCTTTATTCCTTCC
GACGCTCACCTTTTG
CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGTTCAGATCTGAGCCCCATTTTTTAATGT
TGTTATTTGATTTTCCGATGTCCATCTTCTTGAGTTCTTTATTTATGTTG
TATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATC
TGTCGGCTGTCTTTTTGCCTTATTGACGCTGTCTTTTGCCTTCGCCACTT
TTTGTAGCTCCCTTAGGTCCCATTTCGCCTTTTTCGATCTTATAGTACCA
CCCATTGTTGTTCTGTTCAGGAATCTTTCTCCCGCGCCCATATCCTTTAG
ATATATAACACAATTTCCCCCCCCCCCGCCACTCCTTTTTTATGTCCACT
GACCTCGTGCATACCATGTTTTCTTCTTACAAGCGCCCACTTTTTACCCT
TGCAACGCGTTTCCTAAACCTTTTTCTGTCGTTGACCCTAACGCTCGCCT
TATGCACACACTATTATATTTTTGTACCCCCTCCTATTTCCTGCCTCCCA
CTGTTGACACTATCGCTTTACCTACTACCTATCCCTCCATAGCCCCTTTA
CGCCCTTTCCCCCTTTTTCAACTATGCCATCGTCCCTTCCCACCCCTCAA
TATCCCCGTCCACCCCCCCTCTTCTTGTCTCGCTTACTTTTGCTTCTAAT
TGTTTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_n08.b1 MSMg01no080_n08.b1 CHROMAT_FILE:
MSMg01no080_n08.b1 PHD_FILE: MSMg01no080_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:51 2005
         (205 letters)



>mm_chr9_27625225_27625829
          Length = 605

 Score =  321 bits (166), Expect = 2e-92
 Identities = 181/186 (97%)
 Strand = Plus / Minus

                                                                       
Query: 20  aactaatagtatgaatatgtgtgtggataatatagtaaatattttatacacatattatta 79
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aactaatagtatggatatgtgtgtggataatatagtaaatattttatacacatattatta 288

                                                                       
Query: 80  tgttctatactttatataacctattatagattaataattatatacattgtccaaatattc 139
           ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 287 tgttctatactttatataacctagtatagattaataattatatacattgtctaaatattc 228

                                                                       
Query: 140 tgattgtgtaatattaaatatataaacaacatgtattataaatttattaagtcagcttct 199
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 227 tgattgtgtaatattaaatatataaacaacatgtattaaaaatttattaagtcggcttct 168

                 
Query: 200 gttaaa 205
           ||||||
Sbjct: 167 gttaaa 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 605
Length adjustment: 8
Effective length of query: 197
Effective length of database: 597
Effective search space:   117609
Effective search space used:   117609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)