BAC Information

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BAC

Clone NameMSMg01-081G23
Chromosome9 (Build37)
Map Location 107,894,244 - 107,894,663
singlet/doubletsinglet
Overlap geneD330022A01Rik
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, 6230427J02Rik
Downstream gene1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081G23.T7 (MSMg01no081_g23.b1)MSMg01-081G23.TJ (MSMg01no081_g23.g1)
ACCAG302038AG302039
length709706
length of high quality
(start - end)		520 (40 - 559)453 (67 - 519)
definitionCHROMAT_FILE: MSMg01no081_g23.b1 PHD_FILE: MSMg01no081_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:38 2005CHROMAT_FILE: MSMg01no081_g23.g1 PHD_FILE: MSMg01no081_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:30:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATTCTT
CCATTCATTCCTGCAACCCTAAGGGGATACAAGCTACAGATGGTAAAACT
GGCCACAATGTGCTTGCAGACAGAGCAAACCCAGTGCCCAGGAAAATTAG
CCCCAAGACCTGCTTCCCCACAGAGTCTGAATTCCAGCTGCCTCCTCTTA
CCATTAGAACCGTATCTGCCTATAAAATCTAAGCCCAGCCAACAAGAAAA
TCAAAAGTTAGCCGGGCGGTGGTGGCTCATGCCTTTAATCCCAGCACTTG
GGAGGCAGAGGCAGGTGTATTTCTGAGTTCGAGGCCAGCCTGGTCTACAG
AGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAATCCTGCCTCAAGAAA
CAAACAAAAAATAAAATAAAATAAAAAAATCAAAAGTTTTGTCTACATTC
AACAAACAAAAGAACCCTTGGTAGAAGAAATAAAACGAAGGATTACTTGT
GTGGATATCAACTGCAGGGTACCAAAGACTCTTCTGAGAGGAAATGAAGA
CGTGCTATGTGTTGGTCTGGAACACAGCTACACCAGCCTAAGATTAGTCT
GCAGACTTGAGATTTACAGAGCCATTGTCTTTAAGATTTGTCAGTGTATT
ATATTTCCATTTATAACGCCTTTTTGAGACAAGGTTTCTTTATGCAGTCC
AGAGTGTCC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCCTCTCTGTCTTACTTAGTTAGGGATTCCAT
TGCTGTGAAGAGACACCATGACCAAGGCAACATTTATAAAAGGAAAACAT
TTAATTGGGGATGGCTTATAGGTTCTGAAGTTCAGTCAACTATCATCACA
CCAGGAATCGTGGCAGCATCCAGGCAGGTTCTGGAAGAGCTGAGAATTCT
ACATCTTGATCCAAAGACAGTCAGGAAAAACTGACTCTACTGTACTGTTC
TTGCTGTCCTGGGTAGAGGTTCAAAACTGACCCCCATAGTGATGTACTTC
CTCCAAAAAGGCCTTCTCTATTCCAACAAAGCCACACCTCCTAATATTGC
TATTCCTTGGGCCTAAGCATATTCAAACCACCACATTCCCCAACTTGCTT
TTGGTTGGTGTTTTTTCACAGCAATAGTAACCCTGACTAAAATAACTAGA
CTTGGGGATAGAATCATGGATCAGTAGGTTAGAGCACTTACTGTTGTTGT
ACCAGGCAGTGGTTTAGTTTCCAGCAATCACAACTCCAGTTCCAGGTGAT
CTGAACCCCTTTTCTGAAGGAAGGCACATATGCTAGCAAACACTCATTAC
CTTTAATTATTTATTTATTAACCACATGATATATTCTTTTCTTTGCGATA
ATTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_g23.b1 MSMg01no081_g23.b1 CHROMAT_FILE:
MSMg01no081_g23.b1 PHD_FILE: MSMg01no081_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:38 2005
         (520 letters)



>mm_chr9_107894244_107895163
          Length = 920

 Score =  756 bits (391), Expect = 0.0
 Identities = 414/423 (97%), Gaps = 3/423 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcttccattcattcctgcaaccctaaggggatacaagctacagatggtaaaactgg 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gaattcttccattcattactgcaaccctaaggggatacaagctacagatggtaaaactgg 361

                                                                       
Query: 64  ccacaatgtgcttgcagacagagcaaacccagtgcccaggaaaattagccccaagacctg 123
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ccacattgtgcttgcagacagagcaaacccagtgcccaggaaaattagccccaagacctg 301

                                                                       
Query: 124 cttccccacagagtctgaattccagctgcctcctcttaccattagaaccgtatctgccta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cttccccacagagtctgaattccagctgcctcctcttaccattagaaccgtatctgccta 241

                                                                       
Query: 184 taaaatctaagcccagccaacaagaaaatcaaaagttagccgggcggtggtggctcatgc 243
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 taaaatctaagcccagccaccaagaaaatcaaaagttagccgggcggtggtggctcatgc 181

                                                                       
Query: 244 ctttaatcccagcacttgggaggcagaggcaggtgtatttctgagttcgaggccagcctg 303
           ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 180 ctttaatcccagcacttgggaggcagaggcaggtggatttctgagttccaggccagcctg 121

                                                                       
Query: 304 gtctacagagtgagttccaggacagccagggctacacagagaatcctgcctcaagaaaca 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gtctacagagtgagttccaggacagccagggctacacagagaatcctgcctcaagaaaca 61

                                                                       
Query: 364 aacaaaaaataaaataaaataaaaaaatcaaaagttttgtctacattcaacaaacaaaag 423
           ||||||||||||||   ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 60  aacaaaaaataaaa---aataaaaaaataaaaagttttgtctacattcaacaaacaaaag 4

              
Query: 424 aac 426
           |||
Sbjct: 3   aac 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space:   464100
Effective search space used:   464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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