BAC Information

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BAC

Clone NameMSMg01-082A20
Chromosome9 (Build37)
Map Location 115,042,569 - 115,195,239
singlet/doubletdoublet
Overlap geneOsbpl10, LOC100043812, Stt3b
Upstream geneEG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10, LOC665772, Dync1li1, Cmtm6, Cmtm7, Cmtm8, Gpd1l, LOC100043813
Downstream geneLOC100039567, LOC670467, EG546164, Gadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082A20.T7 (MSMg01no082_a20.b1)MSMg01-082A20.TJ (MSMg01no082_a20.g1)
ACCAG302511AG302512
length716702
length of high quality
(start - end)		677 (40 - 716)634 (69 - 702)
definitionCHROMAT_FILE: MSMg01no082_a20.b1 PHD_FILE: MSMg01no082_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:26 2005CHROMAT_FILE: MSMg01no082_a20.g1 PHD_FILE: MSMg01no082_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,194,567 - 115,195,239)(115,042,569 - 115,043,202)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTCCCTAGTCCATTAAGTTTAGGGTAAAGCACAAAAACTTACATTGTTGT
TCAATACTGGGGTGCCTAGAGGAGTAAACTGTGCTGCCATTACTTGACTC
TTGTAAGCAAAGCGCCAGGAGCATGAAGTCCTTCCGAGGGTCACCCAGGC
ACTCTCACGCACCCGCTCATGAGTGAAGAACAGAGAATAAGTTGTGTGTT
TGGCAAGGTAAGAAAGGCAATGCTTAAAATTGCTCAAAGAAGGTGATTGA
TAAATACTTTTTTTAATATCTGATGCCAGAAAAAGACAGGCCTGTGGTTA
ATCTCAATGCCACTTAAGTTTGCTTTGGATTGGATTTGTAGTGCTGCGAC
TGAGGATTTGCATGAGAGAAAATAGCCAAACTATACTTAGCAGTAACACC
CCAATCTGCAGCACATTTGTAGTAAGCTATAAATTTAGATTGTGACAATT
CCTGTTTAATATAACCATGAGGGAGGCAGACATTTAGGATGTAATCCCTT
GACCGGGAGCCAAAAGTTTCTTAGACCTAAGGAACTTTAGTGCTTTAATT
AATGAACACTGTTTAACAGCAAGAAAAACTTGTATAAAAATTAACTGTTA
CTGTTTGCTATAGTTTGTGTCAGTCCAAATGTGTATACATTTAAGCTTGA
AATTGTTTCTCCTGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACGGATGACATTTCCATCTTCTAGCCTCACA
TAATCCCGGGTCTCCTTCACTGTTATCAGCGGGGCTTTCCAGAGTAAAAC
TCTAAAAGCATACAGTAAGTTTTTATAGCATATTGAATTTCATGGCATGG
TTCTGAATTTTAACCCGACCCACAAGTATGGTTCACCGAAAGTCTTTTCT
TGCTGTAGCCCTCGGTGCTTGAATGGTAATTGTTCATTCTCGGAAGCATG
TTTTGCCTGGTCGGTTTCTTTCTTTCTTTCTTTTTTTATTTTCCAAAAAG
AAGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTTGCTTACATGGA
GGATTCTGCCTGAATTGACAGCCTATGACTTTGAGTTTTCAGATGTGTCA
GGTCAGGAGGGGTTGGGGCAGCTGTAGTATTTGGTGGCTCAGGTTGCTGT
TGGGTCAGGGGCCACCTTACTCAGATATAAATCCCCTGCACAGTTCTTAT
AAAATGTTACTTAAAAAAAACTTTTATTTTGCACTGCTGAAACTGTGCAA
CCTAGAACCTGGCATATGTTATGCAAGAGCTCTACACTGAGCTATACCAC
AAGCCCTTGGCTGTCTGTGTAGCTCAGGCTAGCCTTGCTTAAAGCTGTAT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_a20.b1 MSMg01no082_a20.b1 CHROMAT_FILE:
MSMg01no082_a20.b1 PHD_FILE: MSMg01no082_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:26 2005
         (677 letters)



>mm_chr9_115194363_115195439
          Length = 1077

 Score = 1286 bits (665), Expect = 0.0
 Identities = 671/673 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttccctagtccattaagtttagggtaaagcacaaaaacttacattgttgttca 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 gaattccttccctagtagattaagtttagggtaaagcacaaaaacttacattgttgttca 818

                                                                       
Query: 65  atactggggtgcctagaggagtaaactgtgctgccattacttgactcttgtaagcaaagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 atactggggtgcctagaggagtaaactgtgctgccattacttgactcttgtaagcaaagc 758

                                                                       
Query: 125 gccaggagcatgaagtccttccgagggtcacccaggcactctcacgcacccgctcatgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gccaggagcatgaagtccttccgagggtcacccaggcactctcacgcacccgctcatgag 698

                                                                       
Query: 185 tgaagaacagagaataagttgtgtgtttggcaaggtaagaaaggcaatgcttaaaattgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tgaagaacagagaataagttgtgtgtttggcaaggtaagaaaggcaatgcttaaaattgc 638

                                                                       
Query: 245 tcaaagaaggtgattgataaatactttttttaatatctgatgccagaaaaagacaggcct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tcaaagaaggtgattgataaatactttttttaatatctgatgccagaaaaagacaggcct 578

                                                                       
Query: 305 gtggttaatctcaatgccacttaagtttgctttggattggatttgtagtgctgcgactga 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 gtggttaatctcaatgccacttaagtttgctttggattggatttgtagtgctgcgactga 518

                                                                       
Query: 365 ggatttgcatgagagaaaatagccaaactatacttagcagtaacaccccaatctgcagca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ggatttgcatgagagaaaatagccaaactatacttagcagtaacaccccaatctgcagca 458

                                                                       
Query: 425 catttgtagtaagctataaatttagattgtgacaattcctgtttaatataaccatgaggg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 catttgtagtaagctataaatttagattgtgacaattcctgtttaatataaccatgaggg 398

                                                                       
Query: 485 aggcagacatttaggatgtaatcccttgaccgggagccaaaagtttcttagacctaagga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 aggcagacatttaggatgtaatcccttgaccgggagccaaaagtttcttagacctaagga 338

                                                                       
Query: 545 actttagtgctttaattaatgaacactgtttaacagcaagaaaaacttgtataaaaatta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 actttagtgctttaattaatgaacactgtttaacagcaagaaaaacttgtataaaaatta 278

                                                                       
Query: 605 actgttactgtttgctatagtttgtgtcagtccaaatgtgtatacatttaagcttgaaat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 actgttactgtttgctatagtttgtgtcagtccaaatgtgtatacatttaagcttgaaat 218

                        
Query: 665 tgtttctcctggg 677
           |||||||||||||
Sbjct: 217 tgtttctcctggg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no082_a20.g1 MSMg01no082_a20.g1 CHROMAT_FILE:
MSMg01no082_a20.g1 PHD_FILE: MSMg01no082_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:26 2005
         (634 letters)



>mm_chr9_115042369_115043402
          Length = 1034

 Score = 1210 bits (626), Expect = 0.0
 Identities = 632/634 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacggatgacatttccatcttctagcctcacataatcccgggtctccttcactgttatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacggatgacatttccatcttctagcctcacataatcccgggtctccttcactgttatca 260

                                                                       
Query: 61  gcggggctttccagagtaaaactctaaaagcatacagtaagtttttatagcatattgaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcggggctttccagagtaaaactctaaaagcatacagtaagtttttatagcatattgaat 320

                                                                       
Query: 121 ttcatggcatggttctgaattttaacccgacccacaagtatggttcaccgaaagtctttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcatggcatggttctgaattttaacccgacccacaagtatggttcaccgaaagtctttt 380

                                                                       
Query: 181 cttgctgtagccctcggtgcttgaatggtaattgttcattctcggaagcatgttttgcct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttgctgtagccctcggtgcttgaatggtaattgttcattctcggaagcatgttttgcct 440

                                                                       
Query: 241 ggtcggtttctttctttctttctttttttattttccaaaaagaagtgtgtgtgtgtgtgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggtcggtttctttctttctttctttttttattttccaaaaagaagtgtgtgtgtgtgtgt 500

                                                                       
Query: 301 gtgtgtgtgtgcgtgtgtgttgcttacatggaggattctgcctgaattgacagcctatga 360
           |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 501 gtgtgtgtgtgcgtgtgtgttgcttagatggaggattctgtctgaattgacagcctatga 560

                                                                       
Query: 361 ctttgagttttcagatgtgtcaggtcaggaggggttggggcagctgtagtatttggtggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttgagttttcagatgtgtcaggtcaggaggggttggggcagctgtagtatttggtggc 620

                                                                       
Query: 421 tcaggttgctgttgggtcaggggccaccttactcagatataaatcccctgcacagttctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcaggttgctgttgggtcaggggccaccttactcagatataaatcccctgcacagttctt 680

                                                                       
Query: 481 ataaaatgttacttaaaaaaaacttttattttgcactgctgaaactgtgcaacctagaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataaaatgttacttaaaaaaaacttttattttgcactgctgaaactgtgcaacctagaac 740

                                                                       
Query: 541 ctggcatatgttatgcaagagctctacactgagctataccacaagcccttggctgtctgt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggcatatgttatgcaagagctctacactgagctataccacaagcccttggctgtctgt 800

                                             
Query: 601 gtagctcaggctagccttgcttaaagctgtatct 634
           ||||||||||||||||||||||||||||||||||
Sbjct: 801 gtagctcaggctagccttgcttaaagctgtatct 834


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space:   638976
Effective search space used:   638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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