BAC Information

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BAC

Clone NameMSMg01-082C20
Chromosome9 (Build37)
Map Location 110,015,642 - 110,016,149
singlet/doubletsinglet
Overlap geneDhx30
Upstream genePlxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540
Downstream geneSmarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082C20.T7 (MSMg01no082_c20.b1)MSMg01-082C20.TJ (MSMg01no082_c20.g1)
ACCAG302607AG302608
length695719
length of high quality
(start - end)
323 (38 - 360)536 (64 - 599)
definitionCHROMAT_FILE: MSMg01no082_c20.b1 PHD_FILE: MSMg01no082_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:35 2005CHROMAT_FILE: MSMg01no082_c20.g1 PHD_FILE: MSMg01no082_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGG
ACCTCAGTAACAGCAGCCAGTGCTTTTAACCACTGAGTCATCTCCCAGTC
CTTATTTATTTTCAAAAGCTCATTTTTAGAAGATTTATGAGTATATATGT
GTGCCAGTTGCTTGCCATGCTCTCAGAGGTCTGAAAAGAGAGTGTTGGAT
CCTATGGAACTGGAATTAAAGATGCTTGTGAGCTGCTGCCACGTGGGAGC
TGGGAATTGAACCCAGTTTCTCTGCAAGAACAAGTAAAAAGTGTTCTTAC
TGTCTCTTCAGTTCTCATCTGTAGATATTTTTAGTTAGAAAGAACTTTTG
GCTAGGATAAATATAGGACTGAACGGTGTTTTCTTATTAACTTTTTTAGT
TAGAGAAAGGAAAGATAAGGCATAATAACTAAAAAAGGTGCCTTAGCAAT
ATGCTTTCTTTTCTAAACCTTGAGTGGATAATTGTCCCGAATTTTTAACA
ACTGAACTTATTTATTGTCCCCATATTTTACTCTTCCCCCCTTTTTTTCT
CCCCCTCTTGCATTTGTCCACCCCCCTTTTCTCGCGTCTCGGGCCTTTCG
TTTTTTTTCTTTTCCCCTGCTCCACCTCCCCCCCTTTTTTCTATCTTCCT
CCTCTCCTCGCTTTTTTCCCATTTTTCCTCCTCCTTTTTTCCCTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCAGTCAGTTCTCATTCCAAAGGGCTGAACTAGGTTT
TCTAAAAGCAGTAAGCAAGTTTGTAGTTAGACAGTCCTTATTCCAATTTC
CTGAGGCCACTTGCTATGGTGGTCCTGATGGAATTTAGTTTCTTCTTGGA
AAGCCCAAGAGAATCTCCAAGTGTTGTAACTGGGTGGAACTGTGTCTGTC
TTGCCACCCTTTATTGCTTTCTTGTTCAATAAAGAGTTTTAGAAGACCAA
AAGGACAAATCTATCAGTTAGAAAGCAGCAGTGACAGAGTGGAGAGCTGA
CCTTCTCATTGTTTTTTTTTTCCTGATTTTCTAAGACAGGGTTTCTCTCT
GCAGCCCTGGCTGTCTTGGAACTAACTCTATAGACCAAGCTGGCCTTGAA
CTCACAGAGATCCACCAGCCTCTTCCTCCAGAGTGCTGGGATTAATGGTG
CATTCCACCACCACCTGGCTTGGCCTTTGAATTCTTAAACCTGGGGAGCG
GTGGTGGGGCTCACTGGTTTCCAGCTTCATTTCCTTTGTCTTCTGGATAA
TGTCTGTGCTCTTGTAGTCTTTGCAGATTCTTGAACCAGGAATAGTAATC
AACACTCATGGCCTTGTGACCCTCCTTCTCAGGATTCCAGCTTTCTCTCC
TGTACAGAAATGTTCAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_c20.g1 MSMg01no082_c20.g1 CHROMAT_FILE:
MSMg01no082_c20.g1 PHD_FILE: MSMg01no082_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:35 2005
         (536 letters)



>mm_chr9_110015640_110016575
          Length = 936

 Score =  959 bits (496), Expect = 0.0
 Identities = 505/508 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtcagttctcattccaaagggctgaactaggttttctaaaagcagtaagcaagtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 tcagtcagttctcattccaaagggctgaactaggttttctaaaagcagtaagcaagtttg 451

                                                                       
Query: 61  tagttagacagtccttattccaatttcctgaggccacttgctatggtggtcctgatggaa 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tagttagacagtccttagtccaatttcctgaggccacttgctatggtggtcctgatggaa 391

                                                                       
Query: 121 tttagtttcttcttggaaagcccaagagaatctccaagtgttgtaactgggtggaactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttagtttcttcttggaaagcccaagagaatctccaagtgttgtaactgggtggaactgt 331

                                                                       
Query: 181 gtctgtcttgccaccctttattgctttcttgttcaataaagagttttagaagaccaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gtctgtcttgccaccctttattgctttcttgttcaataaagagttttagaagaccaaaag 271

                                                                       
Query: 241 gacaaatctatcagttagaaagcagcagtgacagagtggagagctgaccttctcattgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 270 gacaaatctatcagttagaaagcagcagtgacagagtggagagctgaccttctcatcctt 211

                                                                       
Query: 301 ttttttttcctgattttctaagacagggtttctctctgcagccctggctgtcttggaact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ttttttttcctgattttctaagacagggtttctctctgcagccctggctgtcttggaact 151

                                                                       
Query: 361 aactctatagaccaagctggccttgaactcacagagatccaccagcctcttcctccagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 aactctatagaccaagctggccttgaactcacagagatccaccagcctcttcctccagag 91

                                                                       
Query: 421 tgctgggattaatggtgcattccaccaccacctggcttggcctttgaattcttaaacctg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  tgctgggattaatggtgcattccaccaccacctggcttggcctttgaattcttaaacctg 31

                                       
Query: 481 gggagcggtggtggggctcactggtttc 508
           ||||||||||||||||||||||||||||
Sbjct: 30  gggagcggtggtggggctcactggtttc 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)