BAC Information

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BAC

Clone NameMSMg01-082N18
Chromosome9 (Build37)
Map Location 15,336,204 - 15,336,622
singlet/doubletsinglet
Overlap geneBC017612
Upstream geneAmotl1, EG665374, Piwil4, Fut4, 1700012B09Rik, Ankrd49, Mre11a, LOC100040259, Gpr83, Folr4, Panx1, Hephl1, 2200002K05Rik, Crsp6, 4931406C07Rik, Josd3, 5830418K08Rik, LOC100040375, LOC100039955
Downstream geneCcdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082N18.T7 (MSMg01no082_n18.b1)MSMg01-082N18.TJ (MSMg01no082_n18.g1)
ACCAG303128AG303129
length695693
length of high quality
(start - end)
541 (43 - 583)417 (61 - 477)
definitionCHROMAT_FILE: MSMg01no082_n18.b1 PHD_FILE: MSMg01no082_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:26 2005CHROMAT_FILE: MSMg01no082_n18.g1 PHD_FILE: MSMg01no082_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:32:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAA
TTCTCAGTCTTCATCAAAATGTAGTATACAAAATACCAATTCTCACGCCT
CCTTTGTTTGTGTTGCTCTCCACCCCTCCTACATTCCTCTCCTTTCCTCC
TCGTGCTCCTTCTCTTCCCTGCACGAGCCTCTCTTCGGCTTCACCATCAG
GGTGTGAGGAGCCTCTGCCCTGCCTTCTCTCCTCTGTAAGCAATCTTTGA
CAAGGCTACCCCTCAGTCCTGCTACCGATAAAATTCCTTTCCTGGCCTTG
GCCCTGAACTGCTAACTTGAAGATCAGACCTCTCTCTTAGCACTTCAAGA
TGATCACATTGAAAGAGATTTCCCCCAAATTTCTGCCTAGTCTCCTATCC
CTACTCTTCACAGAGGGGAAGCACCTTTGTCCTCTCCATGATGTGCTCCT
GTCCCCTCCATGCTGTGCTCCTGTCCCCTCCATGCTGTGCTCCTGTCCCC
TCCATGCTGTGCTCCTGTCCCCTCCATGCTGTGTTCCTGTCCCCTCCATG
CTGTGCTCCTGTCCCCTCCATGCTGTGCTCCTGTCCCCTCCTTGCTGTGC
TCCTGCCCCCTCCATGCTGTGCTCCTGTCACCTCCATGCTGAGCTGCTGT
AGCCTCCAAGCTGTGCTCCTGTCCCCTCCATGCTGAGCTCCTGTA
GAAGTGGGAGGCCTGGCGGCGCCTTTCGAAAAATTTAGGTGAACTATAGA
TTTACCGCGGAATTCTTCTCTGTCTTCATCTCCAGGTCCAGCCCTGAAGG
TGGGCTGAGCCCCAGTTTCTTTATCAAGAAGGGCCCACGTAGAGTTTTGG
GGATAGGCAGTTGCTATTCTTTTTAAAAAACTACAGGCAGTCCCTCGTTC
CCCCTTCCTTTTTTTATGTATCTGCATCGTCTGGCTCTATAATTACTTAC
TATACTTTGGCTTAGAGGTGGTTTTTCATTTTAGAGGTTCTACAGATGCT
GGTGCTTGTGTTATTTAGCTTGCTCATGAAGTCTGTGCCTGTAAGAACAC
AAGGGCTGTAGCCATGTCTAGGAAGGAGAGGGGAGTGTGCCCAAATCTTG
GTGCAAGGACAGGCTGGCAAGTTCTGGTCAAATGACATTTTCCCGTTTGG
GGTACAACATAATGCATCAGCCACAGGTGAGACAGAGCCACAGGGTGATG
TGCCTTGCCTCTGGAGGACCTTGTTTCCATCTGTGGAAAGTGACGTATAA
AGGATGTTAAACATGAACAGCTGCTGGTCGATAACGTAACAAGCTTATGG
TTAACTAGACTGCTCAGGTTGGATCACGGACACTTTACCTATGTGTGTTC
TGGGCCCCAGTCAACTCTAAAAACCTCGCATGGGCTCCTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_n18.g1 MSMg01no082_n18.g1 CHROMAT_FILE:
MSMg01no082_n18.g1 PHD_FILE: MSMg01no082_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:26 2005
         (417 letters)



>mm_chr9_15336004_15336822
          Length = 819

 Score =  745 bits (385), Expect = 0.0
 Identities = 410/419 (97%), Gaps = 2/419 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcttctctgtcttcatctccaggtccagccctgaaggtgggctgagccccagtttct 60
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 aattcttctctgtcttcatctccaggtccagccctgaaggtggactgagccccagtttct 260

                                                                       
Query: 61  ttatcaagaagggcccacgtagagttttggggataggcagttgctattctttttaaa--a 118
           | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |
Sbjct: 261 tcatcaagaagggcccatgtagagttttggggataggcagttgctattctttttaaagaa 320

                                                                       
Query: 119 aactacaggcagtccctcgttcccccttcctttttttatgtatctgcatcgtctggctct 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactacaggcagtccctcgttcccccttcctttttttatgtatctgcatcgtctggctct 380

                                                                       
Query: 179 ataattacttactatactttggcttagaggtggtttttcattttagaggttctacagatg 238
           |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ataattacttactatactttagcttagaggtggcttttcattttagaggttctacagatg 440

                                                                       
Query: 239 ctggtgcttgtgttatttagcttgctcatgaagtctgtgcctgtaagaacacaagggctg 298
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctggtgcttgtggtatttagcttgctcatgaagtctgtgcctgtaagaacacaagggctg 500

                                                                       
Query: 299 tagccatgtctaggaaggagaggggagtgtgcccaaatcttggtgcaaggacaggctggc 358
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagtcatgtctaggaaggagaggggagtgtgcccaaatcttggtgcaaggacaggctggc 560

                                                                      
Query: 359 aagttctggtcaaatgacattttcccgtttggggtacaacataatgcatcagccacagg 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagttctggtcaaatgacattttcccgtttggggtacaacataatgcatcagccacagg 619


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 819
Length adjustment: 9
Effective length of query: 408
Effective length of database: 810
Effective search space:   330480
Effective search space used:   330480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)