BAC Information

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BAC

Clone NameMSMg01-083P08
Chromosome9 (Build37)
Map Location 26,830,563 - 26,945,744
singlet/doubletdoublet
Overlap geneVps26b, Ncapd3, Jam3
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1
Downstream geneIgsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083P08.T7 (MSMg01no083_p08.b1)MSMg01-083P08.TJ (MSMg01no083_p08.g1)
ACCAG303941AG303942
length733715
length of high quality
(start - end)
165 (50 - 214)212 (73 - 284)
definitionCHROMAT_FILE: MSMg01no083_p08.b1 PHD_FILE: MSMg01no083_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:51 2005CHROMAT_FILE: MSMg01no083_p08.g1 PHD_FILE: MSMg01no083_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,945,583 - 26,945,744)(26,830,563 - 26,830,774)
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGTTCTAGCCTCCCTGAGCTCTCCTGGATTATATTCATAGT
CATTTCAGATCTCTGGTTGAAATCTTGGAGTCTGGAGATGCGAATTGTTG
TTTAAGTTAGAGACATACACTGAGCAGCGAATCTTGGAATTTGTCTTGCT
GTAGACCTCAATAGATGAGACCGAATTTCCTTTGTCAGTGCAGCCCCCCT
GCATTGTGCTTCTGTACTTGAAGCAGTTTGATAAATCCCCGATACTTAGA
AACTGGACTGACGATCTGGAGGCCTGCGTTCACACTGTTGATCCCTCCTG
TTCTTTCCAGCAGTCTTACCCACCGACCCATACCTACCTATCTACTCATG
CTGTCCTCGTTGGTGCCGGGTGATGCGTGCAACTCTACCCACATTTCCAT
CTCCTTATTTCTACCTCACTACTTCTCCTCAACTCCTAACGCTCCTCTTT
CTCTTTCTCTATATACCTTTTATTCTCTTTCTCTCTCTACTACTTCCTCC
ACCTTCTTCTCTCCTACATTATATCCCCCCTCCTCCTTACTCCACCCCCC
ACTACCTCTTCCTTTACTCCATTCTTACTTTTACGCCACACAACCAACTC
ACCGATCCTCCTTCACCCTCTTTTCTCCTTCCCTCCCTCCCCCTCCCCTC
GTCTCTCAACNCATTAACTTTCTTTCTATCTCC
TTCATTGTAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATATAAGAAGCACATTGCCCTAATTTCC
ATAAACTTCCAGTGGAAAAACTGCAGCATAAAGGGGAAAGTGGAAAGAGA
AGGAAGAAAACACACAAAAGCAACGATCATACAGCCCAAAGGCAACATGA
GAAATAAGAAACAGAGATGGTTCCAAGTATGCTCAGACTGCAGTATTTAA
GGATCCTAGCAAAGGTGCAGAAGTCCCTAGCCTGGCCCAGCAGGGGGCTC
GGGTAAAAGACCTTTTCTGTACAGCATCCCATTCTCTCCAGAGCTTTTCT
TCCTGTAACACATCAGCCTCATTGCCTACAAGAAATTCCATGAGGGAACA
CTGTGGTCTGAGGAAAGCAAGAACAGCCTTTTGCTATTTTATTTTCTTAA
GACAGGTCTTGCTACATATCCCAAACTGGCTTTAAAAAGAGAACATTCTC
CTGGTACATCCTCTCCATTGCTAATAACACTGGAGTATGCCATCACATTC
TAGCATGAAACGGCCTTTTTGATTTGTAATGCTTCTAGTAGTTTGTAAAG
TGTCCTGTTACTCTGCGGTCTTATTGGCAGAATTGTAACTTTACTACGGT
CATTTGCCAGGAGTTTTGGTTTCACTTTAAAATAATTTAGGTATACAAAC
CTCCAGGGGTCCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_p08.b1 MSMg01no083_p08.b1 CHROMAT_FILE:
MSMg01no083_p08.b1 PHD_FILE: MSMg01no083_p08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:51 2005
         (165 letters)



>mm_chr9_26945380_26945944
          Length = 565

 Score =  275 bits (142), Expect = 1e-78
 Identities = 157/162 (96%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagttctagcctccctgagctctcctggattatattcatagtcatttcagatct 63
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 365 ggaattcagttctagcctccctgagctttcctggattatattcatagtcatttcagatct 306

                                                                       
Query: 64  ctggttgaaatcttggagtctggagatgcgaattgttgtttaagttagagacatacactg 123
           |||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct: 305 ctggttgaaatcttggagtctggagatgtgaattgttgtttaagttagaggcatacactg 246

                                                     
Query: 124 agcagcgaatcttggaatttgtcttgctgtagacctcaatag 165
            ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 245 ggcagcgaatcttggaatttgtcttgttgtagacctcaatag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 565
Length adjustment: 8
Effective length of query: 157
Effective length of database: 557
Effective search space:    87449
Effective search space used:    87449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no083_p08.g1 MSMg01no083_p08.g1 CHROMAT_FILE:
MSMg01no083_p08.g1 PHD_FILE: MSMg01no083_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:51 2005
         (212 letters)



>mm_chr9_26830363_26830974
          Length = 612

 Score =  410 bits (212), Expect = e-119
 Identities = 212/212 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atataagaagcacattgccctaatttccataaacttccagtggaaaaactgcagcataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atataagaagcacattgccctaatttccataaacttccagtggaaaaactgcagcataaa 260

                                                                       
Query: 61  ggggaaagtggaaagagaaggaagaaaacacacaaaagcaacgatcatacagcccaaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggaaagtggaaagagaaggaagaaaacacacaaaagcaacgatcatacagcccaaagg 320

                                                                       
Query: 121 caacatgagaaataagaaacagagatggttccaagtatgctcagactgcagtatttaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caacatgagaaataagaaacagagatggttccaagtatgctcagactgcagtatttaagg 380

                                           
Query: 181 atcctagcaaaggtgcagaagtccctagcctg 212
           ||||||||||||||||||||||||||||||||
Sbjct: 381 atcctagcaaaggtgcagaagtccctagcctg 412


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)