BAC Information

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BAC

Clone NameMSMg01-084D09
Chromosome9 (Build37)
Map Location 68,209,503 - 68,393,951
singlet/doubletdoublet
Overlap genenone
Upstream geneTln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c, LOC100041451
Downstream geneRora, 9530091C08Rik, Narg2, EG665815, EG244913, Anxa2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084D09.T7 (MSMg01no084_d09.b1)MSMg01-084D09.TJ (MSMg01no084_d09.g1)
ACCAG304131AG304132
length702703
length of high quality
(start - end)
240 (42 - 281)251 (71 - 321)
definitionCHROMAT_FILE: MSMg01no084_d09.b1 PHD_FILE: MSMg01no084_d09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:11 2005CHROMAT_FILE: MSMg01no084_d09.g1 PHD_FILE: MSMg01no084_d09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,393,717 - 68,393,951)(68,209,503 - 68,209,753)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCCATTTCTTCCACGTTTTACAGTTCCTGTGGAGGTCAGTGCTTCCAGGT
TCTTTCTGATTTGTACAGAGTGATCCTTTGTGGACGCTCCTTATCTTTCT
GTCTCTGGGTTTAGAAACTTCACAGTAGGATCTGACATGTGAAGTTCCTT
GAAATTCTTTGTGATAGGTACTCAATAGTCCTTTGTACACTTGAGATGAA
CATCACTTGGGGAATTAAAAACAAAATCAAATTAGCTGACTAGGAGGTTT
GAGTGTCAGTCCACCTGTTACTTGTCTGCTCATTGCTCTTGTGCTGAGAT
GAGTCAGGATGACACTTATCAATCATTTTCCTATTTTCCTACTTGATTTT
AAAATGTTGATTGCCACCACACTATATTAGGAATTCTCATCTGATTTCTC
CCATTCTCCACACAGTGCCCTGTCCATGTTTGCTGGACATCCTGTCATCA
GTCAGAGACCCTCAGTTATTATTATCTGAGGTGTCTTGTCCCTTTCTATT
GTTTGTTCTGGTTTTCTCTTTAGTTTTGGAGATATTCTGAATTTTCTTCT
ACTTTTTGCTTGTCCAGCCCTTATATGATGAAATCTTATTGCACGCCTTT
CTTACTTTCCTGTGTATTTACTGTCCGCCTACATTCATTCCTACGCCCTT
AC
TACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGATTTGTGGAGAGAGAAGATTGGTAGGT
TTGGGGTCAGGAAGGGACTTTAAAAACCAAAAAGCAAATAAAGCCAGCCA
GATGTCTCTGTCCCACTCAGGGGCACACCCATACATGATCAAGTTTATAG
GGATGTGCAGATTAAACCATCAATCTCACTGTTCCCATGGTTAAGATATG
ACACATGGTCTCTGAAGGGCCAGGTAAGTCAGACTGCAGCCCTTGAGTAT
GGCCATACTTGGTGCCTGCCATTCTGGAGAGAAGCTCATTACCTTGATAT
ACTCTGAGATGTCACTGTTATGTTCCCTGACTGTCTGTCTCACACTCTGC
AGTATTGTGCCCCACCAGAATCCAAGTCTGAAGTCTTAAATGGTGACCAC
CTACCCCTGCCTATGTGAAAAACGACATCGCTTATGTGCTCAACTTCCGC
ATTAGTGTTTGATATGGCTGAGACATTGACATAAAGACCGATACTGATAG
ACAGATAGATAGACCGATATTCAGACCGAGAGACAGAGAGACCGAGACTT
TCCCGCCCCGGTTGATAGTAAGAAGAGCGAATACTGTTTACCCTGTTACA
GCTATTTTTTCTACCTCCTCCTTTTGCCTTTCCCCACCACCCCCTTTTTT
TCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_d09.b1 MSMg01no084_d09.b1 CHROMAT_FILE:
MSMg01no084_d09.b1 PHD_FILE: MSMg01no084_d09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:11 2005
         (240 letters)



>mm_chr9_68393512_68394151
          Length = 640

 Score =  439 bits (227), Expect = e-128
 Identities = 233/235 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccatttcttccacgttttacagttcctgtggaggtcagtgcttccaggttctttc 65
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 gaattccatttcttccacgttttacagttcctgtggaggccagtgcttccaggttctttc 381

                                                                       
Query: 66  tgatttgtacagagtgatcctttgtggacgctccttatctttctgtctctgggtttagaa 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgatttgtacagagtgatcctttgtggacgctccttatctttctgtctctgggtttagaa 321

                                                                       
Query: 126 acttcacagtaggatctgacatgtgaagttccttgaaattctttgtgataggtactcaat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acttcacagtaggatctgacatgtgaagttccttgaaattctttgtgataggtactcaat 261

                                                                  
Query: 186 agtcctttgtacacttgagatgaacatcacttggggaattaaaaacaaaatcaaa 240
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 260 agtcctttgtacacttgagatgaacatcacctggggaattaaaaacaaaatcaaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no084_d09.g1 MSMg01no084_d09.g1 CHROMAT_FILE:
MSMg01no084_d09.g1 PHD_FILE: MSMg01no084_d09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:11 2005
         (251 letters)



>mm_chr9_68209303_68209953
          Length = 651

 Score =  470 bits (243), Expect = e-137
 Identities = 249/251 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggatttgtggagagagaagattggtaggtttggggtcaggaagggactttaaaaaccaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggatttgtggagagagaagattggtaggtttggggtcaggaagggactttaaaaaccaa 260

                                                                       
Query: 61  aaagcaaataaagccagccagatgtctctgtcccactcaggggcacacccatacatgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 261 aaagcaaataaagccagccagatgtctctgtcccactcaggggcacacccatacatggtc 320

                                                                       
Query: 121 aagtttatagggatgtgcagattaaaccatcaatctcactgttcccatggttaagatatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtttatagggatgtgcagattaaaccatcaatctcactgttcccatggttaagatatg 380

                                                                       
Query: 181 acacatggtctctgaagggccaggtaagtcagactgcagcccttgagtatggccatactt 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 acacatggtctctgaagggccaggtaagtcagactggagcccttgagtatggccatactt 440

                      
Query: 241 ggtgcctgcca 251
           |||||||||||
Sbjct: 441 ggtgcctgcca 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)