BAC Information

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BAC

Clone NameMSMg01-084L09
Chromosome9 (Build37)
Map Location 102,405,076 - 102,405,301
singlet/doubletsinglet
Overlap genenone
Upstream geneEphb1, 9630041A04Rik
Downstream geneKy, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084L09.T7 (MSMg01no084_l09.b1)MSMg01-084L09.TJ (MSMg01no084_l09.g1)
ACCAG304491AG304492
length701703
length of high quality
(start - end)
226 (86 - 311)534 (72 - 605)
definitionCHROMAT_FILE: MSMg01no084_l09.b1 PHD_FILE: MSMg01no084_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:49 2005CHROMAT_FILE: MSMg01no084_l09.g1 PHD_FILE: MSMg01no084_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGCGGGCGCGGAANNCC
CANGCTTACATAAGCGAGGNNNCCGNAGAANGANGGACCACATGGACAAG
GGAGGCTTCACAAGGCCATGAAGGGGCTGAAAACTCCTTCTGTCCTAGGG
ATATGGTCTCCATTATAACAACCATGACACTACACAGCACACACATGTTT
TTGCTGATGCGCTGAAGGCAAGCCTGTTACCTGCCAGCAACCATAGCTTT
ATATTTGTGCAAAGTACACACTTGATAATAGTGACTATGCACACTGCATT
CATGTATTTACATTATTCCTTTCACGCNAGACTACACCCGCATTCGNAAA
AATTATGCTCTCCACCAAACAAATCTGACTTTGAAAATGCCGTAATGCTA
TCTTATACCCCACATGCTAATGTAAATACTTTTATAGAAAGCTAAGAAAT
TTTTGCTCCATTATGGTGTTTTTTGATTGTGTCATTTCCTCTTGTTTTTG
ACTCATCCTCCTGTTTATTTGCTTATTATGACTCACAGGCAACAGACTAC
TCTATATCCGTATCCACGTACCTTTGTCCCCATTCGGTATCTATCACGTA
TTTGTTTATCTTCTTACTGACTTCGTACACAGTATTTACGTACCACGCTT
TTTTTTTTCTTTTTTTCGCTATGCCCATCCCTCCCATTCCCTTACTTCTA
G
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATGAACAGTTATGTGCGCATGCGTCAGAG
TGCACGTGAAGGCCAAAGATCAACTTTAAGTGTCACCCTTGGGTGCTGTC
TACATTGTTTTTTGAGTAGGCTCTTACTTGGCCTGGAACATACTGATTAG
TCCAGGCAGGCTAGCCAGAAAGCCCCAAGGTCTTCCTGTCTCTGCTACCT
CGTGCTAGGACAATAGGCTCATGCCATCATTTCTGGCTTTGCACATGGAT
TCTGGGGCTGGAGATCAGGTCCTCGTGCTTTTAAGGCAATCACACTATTG
ACTGAGCCATTTCCCTGGTCTCACACAAACACCAACCATCTTGCATTAGC
ATCCTCTCTAATGACATCCTTTTAACTTGATTGCCGTTACAAAGACCCTG
TCTATGGAAATGGTCATAGATAGGGTCCTAGATCGCTTGGAGATAGAGAT
TTAGCATATGAATTGTGAGGGTGGAATAATTCAACCCTAAACATCTCTCG
ACCACACTCCCATACATTCTTGCAAACTACGGGTGAGAAAATAATATTTA
CTTGTAGGGCCTCTAACAGAAAAGTGCCCATTTCCAACTAGGATGTAAGA
AGTTTCCAGTCTTCACATGGGATCCACCCTTGGTGAACCCTATCCCAGGT
AGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_l09.b1 MSMg01no084_l09.b1 CHROMAT_FILE:
MSMg01no084_l09.b1 PHD_FILE: MSMg01no084_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:49 2005
         (226 letters)



>mm_chr9_102404876_102405501
          Length = 626

 Score =  360 bits (186), Expect = e-104
 Identities = 216/226 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaccacatggacaagggaggcttcacaaggccatgaaggggctgaaaactccttctgtcc 60
           ||||||||| || ||||||| |||||||||  |||| |||||||||||||||||||||||
Sbjct: 426 gaccacatgtacgagggaggtttcacaaggttatgatggggctgaaaactccttctgtcc 367

                                                                       
Query: 61  tagggatatggtctccattataacaaccatgacactacacagcacacacatgtttttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tagggatatggtctccattataacaaccatgacactacacagcacacacatgtttttgct 307

                                                                       
Query: 121 gatgcgctgaaggcaagcctgttacctgccagcaaccatagctttatatttgtgcaaagt 180
           |||||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||
Sbjct: 306 gatgcgctgaaggcaagcctattacctgccagcaaccatagcagtatatttgtgcaaagt 247

                                                         
Query: 181 acacacttgataatagtgactatgcacactgcattcatgtatttac 226
           |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 246 acacacttgataatagtgactatgcacactgcattcctgtatttac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)