BAC Information

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BAC

Clone NameMSMg01-084P01
Chromosome9 (Build37)
Map Location 20,526,404 - 20,526,819
singlet/doubletsinglet
Overlap geneOlfm2
Upstream geneOlfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1
Downstream geneCol5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084P01.T7 (MSMg01no084_p01.b1)MSMg01-084P01.TJ (MSMg01no084_p01.g1)
ACCAG304658AG304659
length711719
length of high quality
(start - end)
341 (41 - 381)404 (69 - 472)
definitionCHROMAT_FILE: MSMg01no084_p01.b1 PHD_FILE: MSMg01no084_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:06 2005CHROMAT_FILE: MSMg01no084_p01.g1 PHD_FILE: MSMg01no084_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCCTGATCCTATCGCCTCTACCTCCATGGTGCGGAGATGTCAGGCATGCA
TTGCCGTGTCTGTCTCACACTGCATATTCCTAACACCAAACGTTCATCAG
TTTGGAACTAGGATAACTCAACGAGACAAATTTAATTTTTTTTTTGAAAA
TAGCAAGAAAAATCAGCTGGTGTGTGGTGGCACATGCCTTTATCCCAGCA
TTTGGAAGGCAGAGGCAAGAGGATCTCTGAGTTCAAGGCCAGCTTGTTTT
ATGGATCAAGTTTCAGGTGTTCAGTGCTACACAGAGAAACTCTGTCTTAA
AAAAAAAAAAATAGAAGGAAAAAAAGTATCACTGACACTAGGTAAGGGGT
TAAGGCCTATGTAACAGTTGTCTGTCTAGCCAGCCATTTTATACTGTTAC
TAATGTTACAAGGAAACTTTCTTATGTGTTGTAACTAGAAAGCTTTCTCA
TGCCTGAGTTGTTTGCATATTCTGCTATGTTCTGTGTTCATAGAACCCAT
TTACCACAGAGGTCCGCTAGGACTGCTTTTTATAGTTAGCTATAGTACGT
GTGTATTTCGACTCTAACCCTCCAGCATTACTTCCCTGTCCCTGTAAACG
AGCCTTTAATGGCTTCCTTGTTTCTTTAAATCCTGACCCGCGGATATGGT
TTCCTCCTTTC
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCCACTGTGTGTGCATTTACCCTCTTAGCCTCC
CCCTCTTTGGGTTCTACTCCTTTCCTACAACCCGTTATTGAGCACCTACT
ATGTGTTTTCAGGTTTTCCCTCCAACCCTCGGGATGGAAAGACGAGAGGA
TGGATTAACAGAAGAAATAAAGGATAGATAGGTGTACAGAGGGAGAGAGA
CATAGGGTGTGATGGGAGAGGAGGCAATGTGGCTATAACGATGGATGGAT
CAGGCCTCCATTACCCTCAATAGTTCAATGGGGGTGAGAACGTGAAGGCA
CTTGACATCTACCCCGATGACCTGAGTTCTCTCTCCAGAATCCACATGGA
GGAAGAAGAGAACTGACTTTGTCCTTTGACCTCTCCATGTGCTCCAAGGC
ACACAAATACCCCTTGATCAAACACAAACTAAATAAATAGACGTTTGCTT
TGGGTGTTTTTGTTTGCTTGCTTTGTTGGCTGGTTTGCTTTGGGCTTTAA
CTACTTCTTTACTTGTTTTTTCTTGTCTGCTCACGTTTCTCCCTGTATCT
TTCCCCCCCGCGCTCGCTATATTCGTGGGGTGTTATTGGGTTTTTTTCTT
CTCGCGCTGTTCTTTTTTTCTCTCCCCCCGCTTTTCCGCTCTCCCTCTTC
TCCCGCATTTATTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_p01.g1 MSMg01no084_p01.g1 CHROMAT_FILE:
MSMg01no084_p01.g1 PHD_FILE: MSMg01no084_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:06 2005
         (404 letters)



>mm_chr9_20526204_20527007
          Length = 804

 Score =  685 bits (354), Expect = 0.0
 Identities = 395/416 (94%), Gaps = 12/416 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccactgtgtgtgcatttaccctcttagcctccccctctttgggttctactcctttcctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccactgtgtgtgcatttaccctcttagcctccccctctttgggttctactcctttcctac 260

                                                                       
Query: 61  aacccgttattgagcacctactatgtgttttcaggttttccctccaaccctcgggatgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 261 aacccgttattgagcacctactatgtgttttcaggttttccctccaacccttggggtgga 320

                                                                       
Query: 121 aagacgagaggatggattaacagaagaaataaaggatagataggtgtacagagggagaga 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacgagaggatggatttacagaagaaataaaggatagataggtgtacagagggagaga 380

                                                                       
Query: 181 gacatagggtgtgatgggagaggaggcaatgtggctataacgatggatggat-------- 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||        
Sbjct: 381 gacatagggtgtgatgggagaggaggcaatgtggctataacgatggatggattaagggag 440

                                                                       
Query: 233 ----caggcctccattaccctcaatagttcaatgggggtgagaacgtgaaggcacttgac 288
               |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 441 ggatcaggcctccattacccacaacagttcaatgggggtgagaacgtgaaggcacttgac 500

                                                                       
Query: 289 atctaccccgatgacctgagttctctctccagaatccacatggaggaagaagagaactga 348
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atcaaacccgatgacctgagttctctctccagaatccacatggaggaagaagagaactga 560

                                                                   
Query: 349 ctttgtcctttgacctctccatgtgctccaaggcacacaaataccccttgatcaaa 404
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ctttgtcctctgacctctccatgtgctccaaggcacacaaatactccttgatcaaa 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space:   314025
Effective search space used:   314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)