MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-085O01
Chromosome	9 (Build37)
Map Location	60,793,300 - 60,857,677
singlet/doublet	doublet
Overlap gene	A430102L10
Upstream gene	Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143
Downstream gene	LOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5
Link	Open Mouse BAC browser

Click to get alignment info.

name	Nr2e3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:23958 MGI:1346317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG665389 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:665389 MGI:3647735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Thsd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207596 MGI:2672033
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	LOC100039792 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	EG384942 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384942 MGI:3648610
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins

name	Lrrc49 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102747 MGI:2442689
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Larp6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67557 MGI:1914807
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040447 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Uaca (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72565 MGI:1919815
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	ENSMUSG00000052143 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:791387 MGI:3642719
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs

name	A430102L10 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:330956
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100040481 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Tle3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21887 MGI:104634
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039851 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039851
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 15 Proteins

name	Rplp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56040 MGI:1927099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Kif23 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71819 MGI:1919069
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Paqr5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74090 MGI:1921340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Nr2e3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:133892966 GeneID:23958 MGI:1346317
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nuclear receptor subfamily 2, group E, member 3 transcript_id : NM_013708.4

name	EG665389 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386158 GeneID:665389 MGI:3647735
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : predicted gene, EG665389 transcript_id : XM_976601.1

name	Thsd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351523 GeneID:207596 MGI:2672033
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thrombospondin, type I, domain containing 4 transcript_id : NM_001040426.2

name	Thsd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142361124 GeneID:207596 MGI:2672033
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thrombospondin, type I, domain containing 4 transcript_id : NM_172444.2

name	LOC100039792 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259994 GeneID:100039792
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : hypothetical protein LOC100039792 transcript_id : XM_001473511.1

name	EG384942 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386160 GeneID:384942 MGI:3648610
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins product : predicted gene, EG384942 transcript_id : XM_357952.4

name	Lrrc49 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142370683 GeneID:102747 MGI:2442689
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : leucine rich repeat containing 49 transcript_id : NM_145616.3

name	Larp6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372822 GeneID:67557 MGI:1914807
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : La ribonucleoprotein domain family, member 6 transcript_id : NM_026235.3

name	LOC100040447 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260010 GeneID:100040447
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100040447 transcript_id : XM_001475271.1

name	Uaca (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130474 GeneID:72565 MGI:1919815
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : uveal autoantigen with coiled-coil domains and ankyrin repeats transcript_id : NM_028283.2

name	ENSMUSG00000052143 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149260012 GeneID:791387 MGI:3642719
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs product : predicted gene, ENSMUSG00000052143 transcript_id : XM_001475287.1

name	A430102L10 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259996 GeneID:330956
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein A430102L10 transcript_id : XM_001473612.1

name	LOC100040481 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149260014 GeneID:100040481
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : hypothetical protein LOC100040481 transcript_id : XM_001475306.1

name	Tle3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6678360 GeneID:21887 MGI:104634
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transducin-like enhancer of split 3, homolog of Drosophila E(spl) transcript_id : NM_009389.1

name	LOC100039851 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259998 GeneID:100039851
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 ESTs, 15 Proteins product : similar to Hmgb1 protein transcript_id : XM_001473665.1

name	Rplp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130696 GeneID:56040 MGI:1927099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ribosomal protein, large, P1 transcript_id : NM_018853.3

name	Kif23 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:29568093 GeneID:71819 MGI:1919069
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : kinesin family member 23 transcript_id : NM_024245.3

name	Paqr5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383667 GeneID:74090 MGI:1921340
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : progestin and adipoQ receptor family member V transcript_id : NM_028748.2

name	Nr2e3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305323 CCDS:CCDS23255.1 GeneID:23958 MGI:1346317
definition	GO_component : GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0004879 - ligand-dependent nuclear receptor activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA]; GO:0003707 - steroid hormone receptor activity [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0045872 - positive regulation of rhodopsin gene activity [Evidence IGI]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0002073 - retina development (sensu Mammalia) [Evidence IMP]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : retinal degeneration 7 product : photoreceptor-specific nuclear receptor protein_id : NP_038736.1

name	EG665389 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386159 GeneID:665389 MGI:3647735
definition	codon_start : 1 product : hypothetical protein protein_id : XP_981695.1

name	Thsd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94536769 GeneID:207596 MGI:2672033
definition	GO_component : GO:0031012 - extracellular matrix [Evidence IEA] GO_function : GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : isoform a is encoded by transcript variant 1 product : thrombospondin, type I, domain containing 4 isoform a protein_id : NP_001035516.1

name	Thsd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369599 CCDS:CCDS23256.1 GeneID:207596 MGI:2672033
definition	GO_component : GO:0031012 - extracellular matrix [Evidence IEA] GO_function : GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : thrombospondin, type I, domain containing 4 isoform b protein_id : NP_766032.1

name	LOC100039792 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259995 GeneID:100039792
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473561.1

name	EG384942 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386161 GeneID:384942 MGI:3648610
definition	codon_start : 1 product : hypothetical protein protein_id : XP_357952.4

name	Lrrc49 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981832 CCDS:CCDS23257.1 GeneID:102747 MGI:2442689
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : leucine rich repeat containing 49 protein_id : NP_663591.2

name	Larp6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981025 CCDS:CCDS23258.1 GeneID:67557 MGI:1914807
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA] GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006405 - RNA export from nucleus [Evidence IEA]; GO:0006396 - RNA processing [Evidence IEA] codon_start : 1 product : acheron protein_id : NP_080511.2

name	LOC100040447 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260011 GeneID:100040447
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475321.1

name	Uaca (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28077007 CCDS:CCDS23259.1 GeneID:72565 MGI:1919815
definition	GO_component : GO:0043293 - apoptosome [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005829 - cytosol [Evidence IDA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0005635 - nuclear envelope [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0048471 - perinuclear region [Evidence IDA]; GO:0005625 - soluble fraction [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0008630 - DNA damage response, signal transduction resulting in induction of apoptosis [Evidence IMP]; GO:0008631 - induction of apoptosis by oxidative stress [Evidence IMP]; GO:0050728 - negative regulation of inflammatory response [Evidence IMP]; GO:0042347 - negative regulation of NF-kappaB import into nucleus [Evidence IMP]; GO:0043065 - positive regulation of apoptosis [Evidence IMP] [Evidence IDA]; GO:0043280 - positive regulation of caspase activity [Evidence IMP] [Evidence IDA]; GO:0042307 - positive regulation of protein import into nucleus [Evidence IMP]; GO:0009411 - response to UV [Evidence IMP] codon_start : 1 product : nuclear membrane binding protein NUCLING protein_id : NP_082559.1

name	ENSMUSG00000052143 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149260013 GeneID:791387 MGI:3642719
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475337.1

name	A430102L10 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259997 GeneID:330956
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001473662.1

name	LOC100040481 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149260015 GeneID:100040481
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001475356.1

name	Tle3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678361 GeneID:21887 MGI:104634
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007222 - frizzled signaling pathway [Evidence IEA]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IEA]; GO:0006350 - transcription [Evidence IEA]; GO:0016055 - Wnt receptor signaling pathway [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : transducin-like enhancer of split 3 product : transducin-like enhancer protein 3 protein_id : NP_033415.1

name	LOC100039851 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259999 GeneID:100039851
definition	codon_start : 1 product : similar to Hmgb1 protein protein_id : XP_001473715.1

name	Rplp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9256519 CCDS:CCDS23260.1 GeneID:56040 MGI:1927099
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0030529 - ribonucleoprotein complex [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA] GO_function : GO:0003735 - structural constituent of ribosome [Evidence IEA] GO_process : GO:0006412 - protein biosynthesis [Evidence IEA]; GO:0006414 - translational elongation [Evidence IEA] codon_start : 1 note : acidic ribosomal phosphoprotein P1 product : ribosomal protein, large, P1 protein_id : NP_061341.1

name	Kif23 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29568094 GeneID:71819 MGI:1919069
definition	GO_component : GO:0005874 - microtubule [Evidence IEA] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0003777 - microtubule motor activity [Evidence IEA]; GO:0003774 - motor activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007018 - microtubule-based movement [Evidence IEA] codon_start : 1 exception : mismatches in translation note : kinesin-like 5 (mitotic kinesin-like protein 1) product : kinesin family member 23 protein_id : NP_077207.2

name	Paqr5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037337 CCDS:CCDS23261.1 GeneID:74090 MGI:1921340
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0008289 - lipid binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0005496 - steroid binding [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : membrane progestin receptor gamma protein_id : NP_083024.1

clone name	MSMg01-163D09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-118J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-093O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055N23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144C19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342B07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-299L03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470O01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517M23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-342J09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-528M07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-487I22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-070B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-526I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-414B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-466L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-546E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-064J23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-066N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120H22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-278F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-379D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450I13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-312O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-110H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-360A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-359P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427J11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-468H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-436J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173I08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-400J07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-147E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-083B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440P23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348F11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-261F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493M18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158G09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-500A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203E24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-135M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124M03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-164B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241I18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260P22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-146N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328D10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-282D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-126L18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307B08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-044C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-279L06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277J20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-095C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-297E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-313C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036G02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-156J22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345I10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077N24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-274O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054L07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317D10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061A02
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-085O01.T7 (MSMg01no085_o01.b1)	MSMg01-085O01.TJ (MSMg01no085_o01.g1)
ACC	AG305335	AG305336
length	1,264	1,368
length of high quality (start - end)	322 (75 - 396)	270 (66 - 335)
definition	CHROMAT_FILE: MSMg01no085_o01.b1 PHD_FILE: MSMg01no085_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:15 2005	CHROMAT_FILE: MSMg01no085_o01.g1 PHD_FILE: MSMg01no085_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:15 2005
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(60,857,356 - 60,857,677)	(60,793,300 - 60,793,562)
sequence	NNNTTCGCAATCGCCGCTAAGACTCCATAGGGAGAGGATCCGCGGAATTC ATCAAGCGCTTCATCCCCATAAAGTTCCACATTGTGTTCTGAAAGGGTCC CCATGGCCCTTAGAAGGGTCAGACATTGAATGACTCTGGGAACTTGCCCT GGATGCCCCCAGCTGGCTGTGACAGGCCTGAGATCTGAAGCTCGCTTGCC TGCTTTATAATTGTCACCCTCTGATATGGCTATTGTCCTTACTACCTCAC ACGGTTGGTTGTAACCTTGTATTTGCACGTTCGTTTTTCTTTCCACACAG CTGCTTCCTGGATGCCAGGGGTGGTTTCTTTAGTCCATTTCCTTCCCACA GCTGTTCCAGAGCCCCATGCACATCAGAAACTATAAATGCTGGTTGATTT GTCTTGCACTGACGATGGGCAATGTTACTGTCCTGTTCTCTGCCTCTCAT CTGGTCCAGATCTCCACTAGAGCTTCCTCAACCCTGTGTACTTAACTCAG AAGTTACCTGGTACCTAATAGGACAGGTCTTCATGAGGACATGCCTCTCT GACTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT CTCTCTCTCTCTTCTATGATGTTTTCGTTGCTGTCTTCATCCTCATCTCC ATATTTTATCTTATCTTTTTACTTCTGTTTCTTTTTTTCTCATGCTTTTG CCGCTAATTTTTATTCTCTTCTTCCGTACTTATCTTTTTTCCCTTCTTAC TTTTTTTCTTTCTCCTTTTACTTCTCCTTTTTTTTTTTTGTTCTCTTTTC TTCATTCTTTTTCTTCCTTTTCTTCTTTCTCTTTCCTTTTCTTTCTTCTT TTTTCCCTTATCTCTCTTTCTTTTTTCTTCTTTTTTTTTATTTTTCTCTT TTTTCTTCTTACCTTCCCTCTTCTATCATCTTTTTTCCTTTTCTTTTCTC TTCACTCATCTTATTACAATTTTCCTTATTTCCCTTTTTTTTTTATTCTT ATTTTTTTTCTTATTTCTTTTTCTCTTTTCTATCTTTTCTCTTCTATCTC ATTTCACTATTTTCTTTTCATTTTTTACTAAATTTTAATATTTTTCTTTC CTTTAATTTATTTCTCTTTTTTTTCTCTTTTGTATATTTTTCCTCATCAT CTTATCTTTTTCATACTTTCTCTATATCTTTCTCTCTTAATCTTATTTCC TCTCTTCTCGTCTTCACTTTTCCTCTTTACTATATCTCAATACTTCCTAT TTATTTTTTATCTA	NNAAAGAGTGGAGGCTGGGGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXCTTTATGACCTCCAAGACCCCTATCTCTGTGTCCC TATCTTCTGTGCTGTGAGTCACACAAAGGAATTAAAAATGTGTCCCCTCT CCAGAGAAACTTAAAATCAACAATGGCCTTGTGGGTGATAAAATCCCTAG CCATCACGTCCTAGCCTCCAGACTCTGGCCCTTTGCATGAGATCTCGGGT CCTACCCATAGGGAAGAGGCCAGTGGGGGACCTGCCACCTGCCTCAAGGG ATAGGAAGAGAAGGAGGAGGAAGGGGAGGAGGTGTAAGATTTTCTTTTCC TTTTTTNTTTTTTTTTTTTTTTTTNTTTTTCTTTCTTTTTTTTCTTTTTT TCTTTTTTTTCTTTCTTTTCTTNTCTTCTTTTTTTTTGTCCGTTTTCCCT TCTTCTTTTTTCTTCGTCCCCCCCTATCTCTTTCTCTCTATTCCTTTCTT TTATTTTTTCTTTATTCTTCTATTAATTATTTTTCCCTTTTCTTTCTCAT TTTATTCTTCCTCTATTATTTCCTTTTTTTTCCTTTTCTTTTTATTTTTT CCTCTTTATCTCTCTCTCCTTTTTTCTCTTTTCCTTTTTTTACTTCTTTT TTCTATTTCCTCTTTTTTCCTTCTTCTTTTTCATCATCTTTCTTTTCTTT CTACCTTCTATCTCTTTCCTCCTCTTTTATTTCTTTTTCTATTTTTCGCT TTTCTTTTTTTTTTTTCTTTTTCTTTTTCTCTTTCACCATTCTCTTTCTC CTTTTTTTTTCTTTTTTTTTTTATTCTTCTCTACTTATCTCTTTTCTTTT TCTTTTTCTCTTTTTCTCTTTTTTTTTACCTCTTATCTTTTTCCACTCTC TCTATTTTCTCTCTATTTCCTTCTTTTCACTTTTTCTTCTTTTCTATCTC TCTTTATTCTTTTTTCCCTTTTTCTTCTATTCCTCTTTTCCTCCTTCTTC TTTTCTTACTTCTTATCCTTCTTTTTTCCTTTTTCTCTTCTCTTCTTCTC ACTATCTTTACTTAATCTTATTTTCCCTTTATCTTTTTTCTTTTCTCATT CTTTCTCATCTTTATTTCTCTTCTCTTCCTTTTCTTCTCTTTTTCTACTT TCTAGTTTCTCTTTTATCATATATCTCTCTATATTATTCTCTCCTTACTT GCTGTCTGTTCCTCTTCACTCACATGTTCTCATTACTCTTCTCATTCTAT CTCTATCTTCCTTTTTTACTCCTTCTCCATTCTTCTCTCTCTCTTTCTTC TCTTCCTTACTCTTTCTTATTCCTTCTTCTCTCTTCTCCTTCTCCTTTTC TCCTTATTTCTCATTTCA
quality values	Open. Hide. 0 0 0 3 6 6 6 6 6 8 6 8 8 8 9 9 10 8 8 8 8 11 17 8 8 8 8 8 19 19 36 28 24 33 33 33 36 43 47 50 50 43 50 53 53 53 53 42 50 43 42 42 42 36 36 36 59 59 50 37 37 37 37 23 23 15 13 9 9 9 8 8 8 8 10 17 34 37 31 31 31 33 33 36 36 36 36 53 53 53 53 57 57 57 59 59 59 59 59 59 50 37 37 31 21 13 10 10 10 11 12 11 11 19 25 34 40 40 43 48 48 48 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 50 50 50 50 68 57 57 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 59 57 57 57 57 57 37 37 43 57 57 68 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 52 52 57 59 59 68 68 57 57 52 52 52 57 57 57 57 57 57 57 68 68 68 68 59 59 57 57 54 59 57 57 57 57 57 57 57 57 57 57 57 47 59 47 47 54 44 44 47 59 35 37 43 59 59 59 59 68 68 68 68 57 57 57 54 54 54 59 59 59 59 59 68 59 59 59 59 59 59 59 59 43 42 30 30 31 40 40 46 46 37 37 23 37 37 47 47 48 59 59 48 48 48 59 48 48 59 59 47 34 29 16 16 15 12 8 8 8 8 8 10 21 27 47 50 50 50 50 50 50 57 59 59 27 19 10 10 19 19 28 40 40 48 57 59 57 48 54 54 57 57 57 57 57 59 57 57 59 59 59 47 47 43 43 39 44 37 32 32 20 20 23 24 22 15 12 11 15 15 18 18 26 26 42 44 30 30 42 42 32 47 43 47 43 37 32 28 28 30 37 37 43 39 39 39 24 22 15 15 15 24 30 40 27 19 12 11 12 15 15 15 28 12 14 12 25 24 32 37 28 32 29 26 24 21 28 19 19 13 19 21 31 26 19 19 15 17 14 20 19 18 22 12 12 12 24 26 31 31 26 23 19 19 28 28 28 28 28 28 28 28 34 30 35 35 28 34 30 20 18 10 12 13 19 19 42 42 54 54 54 57 47 41 41 41 41 41 42 48 43 48 42 36 32 29 19 19 19 24 25 33 33 28 28 25 16 12 19 10 10 10 11 12 11 12 12 21 15 20 15 23 15 15 8 8 6 6 8 8 8 9 9 8 8 11 8 8 10 20 12 11 11 15 13 10 10 8 8 8 10 8 15 8 8 8 10 7 6 8 8 12 12 12 11 8 8 8 8 15 8 8 8 14 12 10 10 8 8 8 10 10 10 9 9 10 10 8 8 8 8 9 9 14 14 16 16 10 10 10 10 10 13 10 12 12 11 11 11 11 11 9 8 10 6 6 6 10 11 10 10 8 8 8 8 8 8 8 10 10 8 6 9 9 9 9 9 8 10 7 9 9 7 10 8 10 10 16 11 11 8 8 8 8 11 8 10 10 8 12 8 10 10 12 8 9 10 13 10 10 11 12 12 11 11 10 10 10 8 11 10 10 9 8 10 10 16 23 21 14 13 9 11 10 10 10 9 10 10 17 16 10 10 10 10 10 10 9 8 8 8 10 8 10 10 10 11 8 8 8 8 10 8 8 8 8 8 10 13 13 10 10 10 10 10 13 15 16 14 8 13 10 10 11 11 16 15 10 9 7 11 8 8 8 8 9 9 9 10 13 14 10 8 8 6 7 8 8 9 10 10 11 12 13 12 19 19 23 28 15 12 8 10 6 6 8 8 8 8 8 11 8 8 8 8 8 6 6 12 12 21 14 12 12 9 10 10 10 11 11 8 8 7 6 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 10 10 8 10 10 9 10 10 10 10 12 19 11 11 8 6 6 8 16 13 16 11 8 8 8 8 8 8 8 8 10 8 8 8 7 8 9 9 10 10 10 9 8 8 8 8 8 8 8 9 14 10 8 8 8 8 8 8 8 10 10 10 10 10 10 17 12 12 11 12 9 14 8 10 10 8 8 9 10 10 10 11 8 11 11 10 9 9 8 8 6 6 6 6 8 8 10 8 8 9 10 10 10 10 10 16 10 10 10 8 6 6 12 10 12 9 10 12 10 10 10 10 10 11 8 9 13 8 8 6 6 10 8 10 8 8 8 8 11 11 13 10 13 10 10 9 8 8 8 8 8 10 12 8 8 6 6 8 8 9 9 11 12 11 11 9 9 9 9 9 9 10 6 7 7 7 11 8 8 6 7 8 8 8 10 9 9 14 9 9 8 15 13 10 10 8 8 8 9 12 11 8 8 8 8 10 8 11 11 9 8 9 15 8 8 8 13 10 16 15 13 12 15 11 8 8 8 10 12 9 9 11 11 10 10 12 13 14 12 8 6 6 8 8 10 10 8 8 8 6 8 8 10 6 6 8 8 11 8 10 6 6 6 6 8 8 11 8 8 8 10 8 8 8 10 17 13 18 9 8 8 8 8 10 10 10 7 7 7 7 11 9 8 8 8 8 11 12 22 14 22 19 17 14 10 10 8 8 6 6 8 8 10 8 10 10 8 8 8 8 8 11 10 11 11 11 8 6 6 7 6 6 6 8 6 10 15 8 8 8 15 9 9	Open. Hide. 0 0 3 6 6 6 6 6 6 7 6 6 6 8 17 8 8 8 10 19 10 10 8 8 8 8 8 10 12 19 19 19 9 9 10 21 19 28 17 20 31 39 36 36 36 37 37 37 47 47 53 53 53 53 53 50 50 50 50 47 47 43 27 20 11 11 8 8 6 7 8 15 21 37 37 37 37 37 37 37 37 57 57 57 50 50 50 53 53 53 53 50 47 47 47 47 47 47 47 47 68 50 53 54 42 42 32 30 21 24 29 29 41 41 41 41 41 41 41 41 41 57 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 54 54 57 57 57 57 57 57 57 57 54 57 57 59 59 59 59 68 57 57 57 57 57 50 50 50 50 52 50 57 57 57 57 57 57 37 57 57 57 57 57 57 57 57 57 57 68 68 68 59 59 57 57 57 57 57 57 57 57 57 57 57 68 57 57 57 57 57 57 57 57 37 37 57 57 57 57 57 57 57 59 59 68 57 57 57 52 52 57 57 59 59 68 68 68 59 59 59 59 59 59 59 59 59 57 57 57 57 44 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 59 59 57 57 57 54 57 57 48 48 43 43 43 57 57 59 57 54 54 54 54 48 48 54 54 54 48 47 47 46 46 59 57 57 57 57 54 54 54 59 59 57 57 48 48 48 57 57 57 48 48 48 47 47 34 34 28 28 23 28 32 32 21 23 12 8 8 6 6 10 10 9 13 9 9 9 16 15 13 8 6 6 6 6 8 10 10 13 3 0 3 8 6 6 6 6 7 7 9 10 11 10 13 21 12 8 3 0 3 8 6 9 9 11 13 6 6 6 6 8 6 7 9 14 9 9 9 10 10 8 7 6 7 6 6 8 15 10 10 10 8 16 10 8 8 8 9 12 16 15 13 10 10 9 3 0 3 17 15 21 25 19 16 12 10 10 10 10 12 9 9 8 10 10 10 10 13 10 11 9 9 10 15 14 14 9 9 10 9 22 22 10 10 10 16 9 9 9 9 9 12 16 16 15 11 11 15 9 12 12 10 10 6 6 10 6 8 8 8 12 9 10 10 10 10 13 10 12 13 13 11 16 10 10 6 6 8 8 11 10 8 8 7 7 10 10 9 8 8 8 8 8 8 13 10 10 8 9 6 8 7 6 8 8 10 10 10 8 8 8 9 10 10 10 10 10 9 9 8 8 8 8 8 8 10 8 6 6 10 10 10 11 8 9 8 10 8 8 8 8 11 11 12 9 10 10 10 12 12 12 11 11 8 8 8 8 8 10 12 15 16 11 11 8 10 7 6 8 8 10 9 10 8 8 8 8 10 10 12 8 6 6 10 8 11 10 10 10 10 9 9 8 8 8 8 11 10 10 14 9 9 9 8 8 7 7 8 10 17 21 21 21 19 13 12 12 12 12 18 13 12 13 15 21 10 8 8 8 8 8 8 8 8 10 11 10 10 10 9 8 10 9 10 9 9 8 8 6 6 8 8 8 8 8 8 8 8 6 7 11 10 8 8 8 9 9 10 10 9 9 10 14 13 15 8 8 8 8 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 10 8 9 12 11 10 8 8 8 8 9 10 10 10 10 8 8 8 8 8 8 8 8 8 12 10 9 6 6 6 8 8 13 10 10 8 8 8 8 10 8 10 10 8 10 8 8 8 8 8 8 8 7 8 10 9 13 8 8 6 7 10 10 9 9 9 6 6 8 8 8 8 8 10 10 15 15 8 8 6 6 9 13 12 19 15 24 19 10 8 6 6 10 10 21 15 18 15 18 13 13 9 8 8 6 6 8 10 10 10 8 8 8 8 8 8 8 8 8 8 6 8 8 10 8 6 6 8 12 13 19 13 11 11 10 10 12 10 10 15 8 8 8 10 9 9 9 14 10 9 8 8 10 10 12 12 10 9 9 8 10 10 15 12 12 8 8 9 9 10 15 11 8 8 8 8 11 14 9 8 8 7 6 10 8 10 10 14 16 9 8 8 7 6 8 8 8 8 9 9 8 8 6 6 8 8 12 11 11 10 10 10 10 15 15 12 8 8 8 8 10 8 9 8 8 6 6 12 8 8 8 8 8 8 10 8 8 6 6 8 8 10 10 12 11 8 8 6 6 8 8 8 8 9 9 9 10 9 9 9 12 9 9 11 11 9 8 8 8 8 8 8 11 8 8 8 8 8 8 10 8 10 15 19 16 12 11 11 11 8 8 8 8 7 6 8 8 8 6 6 6 6 10 10 12 12 9 10 10 15 19 11 13 8 8 8 10 10 17 10 10 9 8 8 8 8 8 8 13 11 9 9 9 8 8 8 8 12 10 10 12 10 8 8 9 9 10 10 8 8 8 8 10 9 8 8 8 12 17 9 8 8 8 8 8 8 10 8 8 6 6 8 6 10 13 13 9 10 10 10 10 10 18 8 8 8 8 6 7 8 8 8 8 11 11 11 8 8 6 6 8 8 11 10 12 16 16 12 14 14 16 14 18 15 15 10 10 11 11 11 10 10 8 8 7 7 9 9 12 10 10 10 10 9 10 9 10 12 17 17 11 11 11 16 13 10 9 8 8 8 6 6 8 8 10 10 10 11 11 8 8 8 8 8 8 6 6 8 7 6 8 8 8 8 8 8 9 9 10 9 9 9 8 7 7 8 8 8 8 8 8 8 8 8 8 10 10 10 9 8 8 8 8 8 8 6 6 8 8 8 8 8 8 8 9 8 8 6 6 8 12 9 9 9 12 11 12 8 8 8 10 8 13 10 8 8 9 7 10 10 9 9 9 9 9 9 13 10 8 8 8 8 10 7 8 12 8 8 8 8 12 6 6 8 8 13 11 17 20 20 15 13 7 6 8 8 11 8 12 9 11 12 9 11 10 10 12 10 10 8 10 8 8 8 10 10 10 10 10 10 10 10 8 8 8 8 14 8 8 8 10 11 8 6 6 8 10 13 10 14 11 11 8 10 7 7 12 12 8 8 8 8 8 12 8 7 10 8 11 8 8 7 9 8 8 8 8 6

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no085_o01.b1 MSMg01no085_o01.b1 CHROMAT_FILE:
MSMg01no085_o01.b1 PHD_FILE: MSMg01no085_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:15 2005
         (322 letters)



>mm_chr9_60857156_60857877
          Length = 722

 Score =  569 bits (294), Expect = e-166
 Identities = 315/322 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccacattgtgttctgaaagggtccccatggcccttagaagggtcagacattgaatgac 60
           ||||||||||||||||||||||||||||| ||  |  |||||||||||||||||||||||
Sbjct: 522 ttccacattgtgttctgaaagggtccccacgggacagagaagggtcagacattgaatgac 463

                                                                       
Query: 61  tctgggaacttgccctggatgcccccagctggctgtgacaggcctgagatctgaagctcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 tctgggaacttgccctggatgcccccagctggctgtgacaggcctgagatctgaagctcg 403

                                                                       
Query: 121 cttgcctgctttataattgtcaccctctgatatggctattgtccttactacctcacacgg 180
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 402 cttgcctgctttataattgtcaccctctggtatggctattgtccttactacctcacacag 343

                                                                       
Query: 181 ttggttgtaaccttgtatttgcacgttcgtttttctttccacacagctgcttcctggatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 ttggttgtaaccttgtatttgcacgttcgtttttctttccacacagctgcttcctggatg 283

                                                                       
Query: 241 ccaggggtggtttctttagtccatttccttcccacagctgttccagagccccatgcacat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ccaggggtggtttctttagtccatttccttcccacagctgttccagagccccatgcacat 223

                                 
Query: 301 cagaaactataaatgctggttg 322
           ||||||||||||||||||||||
Sbjct: 222 cagaaactataaatgctggttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no085_o01.g1 MSMg01no085_o01.g1 CHROMAT_FILE:
MSMg01no085_o01.g1 PHD_FILE: MSMg01no085_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:15 2005
         (270 letters)



>mm_chr9_60793096_60793765
          Length = 670

 Score =  447 bits (231), Expect = e-130
 Identities = 255/263 (96%)
 Strand = Plus / Plus

                                                                       
Query: 5   atgacctccaagacccctatctctgtgtccctatcttctgtgctgtgagtcacacaaagg 64
           |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 atgacctccaggacccccatctctgtgtccctatcttctgtgctgtgagtcacacaaagg 264

                                                                       
Query: 65  aattaaaaatgtgtcccctctccagagaaacttaaaatcaacaatggccttgtgggtgat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 aattaaaaatgtgtcccctctccagagaaacttaaaatcaacaatggccttgtgggtgac 324

                                                                       
Query: 125 aaaatccctagccatcacgtcctagcctccagactctggccctttgcatgagatctcggg 184
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 325 aaaatccctagccatcacgtcctagcctccagactctggccttttgcatgagatctcggg 384

                                                                       
Query: 185 tcctacccatagggaagaggccagtgggggacctgccacctgcctcaagggataggaaga 244
           ||||||||| ||||||||||||||||||| |||||||||  |||||||||||||||||||
Sbjct: 385 tcctacccacagggaagaggccagtggggcacctgccacaggcctcaagggataggaaga 444

                                  
Query: 245 gaaggaggaggaaggggaggagg 267
           |||||||||||||||||||||||
Sbjct: 445 gaaggaggaggaaggggaggagg 467


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information