Query= MSMg01no086_j08.b1 MSMg01no086_j08.b1 CHROMAT_FILE:
MSMg01no086_j08.b1 PHD_FILE: MSMg01no086_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:23 2005
(403 letters)
>mm_chr9_111811256_111812055
Length = 800
Score = 681 bits (352), Expect = 0.0
Identities = 387/400 (96%), Gaps = 5/400 (1%)
Strand = Plus / Minus
Query: 5 gaattcccaactcttaccttttgacatttctactctatcacacctcagagagggatttgg 64
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 600 gaattcccaactcttactttttgacatttctactctatcacgcctcagagagggatttgg 541
Query: 65 ggagtgatacctagcaccaactaacccgcttacattcaaatcctgatttctgatctgagt 124
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ---gtgatacctagtagcgactaacccgcttacattcaaatcctgatttctgatctgagt 484
Query: 125 cttccacctgaggtgggctagtac-aaaaaaaatggccaattctacaaccagagcaagta 183
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 483 cttccacctgaggtgggctagtacaaaaaaaaatggccaattctacaaccagagcaagta 424
Query: 184 atacacatcctccgagtctacaggaacttagagtcaacttgtttccctcacacagtgtgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 atacacatcctccgagtctacaggaacttagagtcaacttgtttccctcacacagtgtgt 364
Query: 244 gcacctggcttcaatttctaattaacaccacacataattccaggaccaaggacaggtgac 303
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 363 gcacctggcttcaatttctaattaacaccacaca-aattccaggaccaaggacaggtgac 305
Query: 304 tccatgccctctcctcctgtttctcatttgtaaaatgaattaacagcagcagcatcaagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tccatgccctctcctcctgtttctcatttgtaaaatgaattaacagcagcagcatcaagc 245
Query: 364 tggtgtcaatccgatgtcagagcctcgaggggaaaggcag 403
||| |||||||| ||||||||||||| |||||||||||||
Sbjct: 244 tggcgtcaatccaatgtcagagcctcaaggggaaaggcag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 800
Length adjustment: 9
Effective length of query: 394
Effective length of database: 791
Effective search space: 311654
Effective search space used: 311654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_j08.g1 MSMg01no086_j08.g1 CHROMAT_FILE:
MSMg01no086_j08.g1 PHD_FILE: MSMg01no086_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:23 2005
(337 letters)
>mm_chr9_111676816_111677550
Length = 735
Score = 528 bits (273), Expect = e-154
Identities = 318/337 (94%), Gaps = 8/337 (2%)
Strand = Plus / Plus
Query: 1 catactggctgccccagtttacgctcctacatcagtgaatgagggctcctcttcccccat 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catactgactgccccagtttacgctcctacatcagtgaatgagggctcctcttcccccat 260
Query: 61 gtcttcatgagcatttcaacaaatgattttctaatgtgcttgtaccaattcacaagcctc 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttcacgagcatttcaacaaatgattttctaatgtgcttgtaccaattcacaagcctc 320
Query: 121 cctggctttgccctgtcgtattagcagcaactggaattttttttagtgcaaatatactga 180
||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||
Sbjct: 321 cctggctttgccctgtcctattagcagcaactggaattttttaaa-tgcaaatatactga 379
Query: 181 gagcataggggcatcaaactattctttagatttgcatttttgtttatctaatgaaactga 240
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 380 gagcataggggcatcaaactattctttatatttacatttttgtttatctaatgaaactga 439
Query: 241 actcatgtctcatcttctgtaggtttgggggacattctatttatgaaatgtcagtcaaag 300
|||| ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 440 actcgtgtctcaacttctgtaggtttgggggatattctatttatgaaatgtcagtcaaag 499
Query: 301 cctttttttttttcttcttcttcttctattttgggtt 337
|||||||| |||||||||||||||||||||
Sbjct: 500 tcttttttt-------cttcttcttctattttgggtt 529
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 735
Length adjustment: 9
Effective length of query: 328
Effective length of database: 726
Effective search space: 238128
Effective search space used: 238128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
