BAC Information

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BAC

Clone NameMSMg01-086K03
Chromosome9 (Build37)
Map Location 13,025,808 - 13,026,155
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC622505, LOC100039680, LOC665285
Downstream geneLOC100039729, LOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086K03.T7 (MSMg01no086_k03.b1)MSMg01-086K03.TJ (MSMg01no086_k03.g1)
ACCAG305890AG305891
length714707
length of high quality
(start - end)
374 (69 - 442)437 (74 - 510)
definitionCHROMAT_FILE: MSMg01no086_k03.b1 PHD_FILE: MSMg01no086_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:27 2005CHROMAT_FILE: MSMg01no086_k03.g1 PHD_FILE: MSMg01no086_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATAATTTGCGGCGCTAAACGACTCCTATAGTTCGAGGATCCGCGGAATT
CTGCAGAAAGTATCTCTGGGTAATGGCAGGCATCTGCTTCCTTAGAGAAG
TTAGATGAAGACTGACTTCCAAGTCCTCTCTTAGCATCTTGTCTTCACCA
TTTATCTGTTTGTGCCACCCCCAGAGCTCCAGAAATAGCTTATAAGTGCT
CCAAACAAGGAAACCTAGAAGTATGTCATCAACATCTTCTGTTGTCATTT
TTCCTTTTCCCCGTAACCCTGTATACCATGCCATGCTTTACCTGGTACTT
TCCAAGCAAGGAGGGCTCAACATTTCAGCCAGCATTGCCAGCCTGGTCCC
AGATGGCTCCATTCTTGATGTCCCCCAGCCTGTGTTGTGTTTTGTATGTG
TGTGTGTGTGTGTGTGTGTGCGTGTGCGTGTGTGTGTGTGTGTTTACAGG
AATGGTATTGATAACAGATAAAGGGGCTGTATGTCTTGTCCTGGTTCCCA
GATTTGCTTTGTTGTGCAGTGAGCTGTTTTATAGCCTGTACAAGGTGAGA
CAGAGCATCCTTTACTGGTCACTTCTTTTCCAACTGGTCAATTTGGCATA
ATTGTCCTTGTCCTCCCAGAAACACCTGCCCTCCTTTCTCTGGAAAAACC
AATTCTGTACTGTTTCTGCTGTCAAAACTTCCCTGAACGCATTTTTGAAT
CTTACCCTTAATGA
CAATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTTAAAGNATAGCCTCTCTGGCTAT
CTATCCCTTGCTTCAGGGAAGATGAGCGGGGATGAGAGCCCTGGGATGTA
TGCTTGTTATAGTGTGTGTGTGTGTGTTTTGTGTTTGGCACATGTGTTAG
GTGCAGAGTGTGCGGCCCGCACTTTCGCCATGGTAGCGTAGGCTTTTGCT
GCAGTGGAGGCGGGACAATCTCCTCAGATTCGGTTTGCTGCTCTAAAAGA
AATTATGCTGCATTATGCCGTGGGGTGCGAGGCTAAGCACTGCACAGAGG
ATAGCTTGCTGTTGGCATCCTGTGGAAGGCATGTCTGATTGCATGAAGGT
TCAGTGTCCTAGTTCCCTTCCCCCAGGAAAAACGACACAGGAGCTGGCCA
AGACCTCTCTGGGTGATGAGCCTAAGGGATGGTTTTGTGTAGGGCCCCTA
TGCTTGCACGCTGGGGATCAGACCTCTACCTTCACCCATGAGGCTTGCTT
GCCGCAATTAAGATCTGGCCTTAGGTTAATTACCATCCTGGCCTTTTGAT
GCACCTGCCACAAGCAAAACACAATCTCCCCAGGAGTGGCTTGTCATGAT
AAAGAGTTAGCCTTTGATAATACTCCCTGGGCATTGCACCAACCTAAAAC
AGGCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_k03.b1 MSMg01no086_k03.b1 CHROMAT_FILE:
MSMg01no086_k03.b1 PHD_FILE: MSMg01no086_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:27 2005
         (374 letters)



>mm_chr9_13025635_13026408
          Length = 774

 Score =  607 bits (314), Expect = e-178
 Identities = 341/352 (96%), Gaps = 4/352 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggtaatggcaggcatctgcttccttagagaagttagatgaagactgacttccaagtcctc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 ggtaatggcaggcagctgcttccttagagaagttagatgaagactgacttccaagtcctc 462

                                                                       
Query: 61  tcttagcatcttgtcttcaccatttatctgtttgtgccacccccagagctccagaaatag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tcttagcatcttgtcttcaccatttatctgtttgtgccacccccagagctccagaaatag 402

                                                                       
Query: 121 cttataagtgctccaaacaaggaaacctagaagtatgtcatcaacatcttctgttgtcat 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 cttataactgctccaaacaaggaaacctagaagtatgtcatcaacatcttctgttgtcat 342

                                                                       
Query: 181 ttttccttttccccgtaaccctgtataccatgccatgctttacctggtactttccaagca 240
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 341 tttgccttttccccgtaaccctgtataccatgccatgctttacctggtactttcaaagca 282

                                                                       
Query: 241 aggagggctcaacatttcagccagcattgccagcctggtcccagatggctccattcttga 300
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 281 aggagggctcaacatttcagcccgcattgccagcctggtcccagatggctccattcttga 222

                                                               
Query: 301 tgtcccccagcctgtgttgtgttttgtatgtgtgtgtgtgtgtgtgtgtgtg 352
           || ||||||||||||||||||    || ||||||||||||||||||||||||
Sbjct: 221 tgccccccagcctgtgttgtg----gtgtgtgtgtgtgtgtgtgtgtgtgtg 174


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)