BAC Information

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BAC

Clone NameMSMg01-087B24
Chromosome9 (Build37)
Map Location 52,523,535 - 52,523,933
singlet/doubletsinglet
Overlap geneGm1715
Upstream geneArhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442
Downstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087B24.T7 (MSMg01no087_b24.b1)MSMg01-087B24.TJ (MSMg01no087_b24.g1)
ACCAG306244AG306245
length733821
length of high quality
(start - end)
400 (24 - 423)---
definitionCHROMAT_FILE: MSMg01no087_b24.b1 PHD_FILE: MSMg01no087_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:07 2005CHROMAT_FILE: MSMg01no087_b24.g1 PHD_FILE: MSMg01no087_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCTCCTATAGGTTGCGGATACGCGGAATTCTTTGTTATGGTTCTACTTA
AATTGGGGGCCAAGAAATACTTCTGTGGGGACAGTAGTTGCCTTGTGCAA
TGTAGAATATAGAGAAATACTCCAGGCTTTTGACCCCTGGAAGTGGAAGT
GGTCAGGTTTCCTTAAGATGTCAGTACTATGTCCCCTACCATACCATGAC
AATAAACAAAATTGTCTTCAGTATTGTCTAGTTGTCAAATGCCTGCCAAG
GGAAGAGAAAGTATCCTCAGCAGAAACCATAGAGCTAGATGGAGATTAAG
TTTGGTCCTCTCTAGAGTAAGAAATTCCAAAGTTATAGATTTCTTTAACA
GGCAAAATAAATATTTTTTACAAAATAAATATTTATGGGCACATATATAC
CTATGCATATGGTTATTAATAAATTGGATGATGAATGGTTTGCAATGTTG
AATAAAAATTGAGTGCATGCAGATATAATCAGTGCAAAATGCAAGTGCCC
ATAGGAAGCATACATTCATAGGAGTCAGGATGGGGAAGAACGGATGGCTT
AGATGTGCATCAATATTCCCCAAATACTCTTTCATAAATATGCTTTGTCG
AACATGTTCTGTACCTATTTCCTATAGCTCTTAATAGGTACCTATCCCAT
TTTTAAATAACTAGCTGAAGGTGAGTTCTTCAAAAAAAAGAACTGAAGCT
CCTGGTGGCCATCACATGTTTTCTGGTTTCAAT
CCTTTTTTCCCCCCCCCCCCTTCCCTTCCCCCTTTCCCCTTTTCCTTCTC
CCATGACACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGCCATCATAAAACGCCACAGGGAGCAGTTTTTAA
CCTCTGAAAAGCTGTTAGTTATATAACCCCTGGACATGTGCTGTTTTGCA
TTTCACTCTACAGGTCTGGACCCCACACCTTCTCACCTGTGTGCCATCAG
GCTTGAGAGGCATTCTGCCAGATGCCCAGCCCACTCTACTCCTACTTCTA
TTGGCAATTCATTTGAAGGCTTAGGGATGCGCCTCTGACCTAACTCACAA
TCGAGCATGGACGTCAGTCACTATGCATGAAACAAATTTCTCTAGAACAA
GCATTTCTTTTTTCCTGCTATAAATATGACATTTTGTTTTATATAACATG
CATGCGATTTTAACCCATGATACCATTTAAATCTTGAAAAACGTTCTCTG
GGCCTTTCCCTTCTGAAAGTTCATGCTACCTTGCATACAGAAATACCCAA
GATCATTTTTTACCACTACTGTCGCCCGTATCAAGCTCTTTGCCTCAATG
CCTACCCTTCAGATTTCCACTATCGCCTACCTGTCTCCCCCCTCTTCATT
ATCTGATTGAAAGAACCCGATTGAATCTAATTCCATATCCCTTGCCGAAC
TAGCCCTCCCTGTTCCTCCCCCCCATACTTTTCCCAGACATAATTTCATT
ATTTCGGCGGCCCATCCTATTCCCCCCTCTTCCCTCTCTTATTTCTAACC
CTTTTATACCATTCCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_b24.b1 MSMg01no087_b24.b1 CHROMAT_FILE:
MSMg01no087_b24.b1 PHD_FILE: MSMg01no087_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:07 2005
         (400 letters)



>mm_chr9_52523334_52524133
          Length = 800

 Score =  772 bits (399), Expect = 0.0
 Identities = 399/399 (100%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattctttgttatggttctacttaaattgggggccaagaaatacttctgtggggacag 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattctttgttatggttctacttaaattgggggccaagaaatacttctgtggggacag 261

                                                                       
Query: 62  tagttgccttgtgcaatgtagaatatagagaaatactccaggcttttgacccctggaagt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tagttgccttgtgcaatgtagaatatagagaaatactccaggcttttgacccctggaagt 321

                                                                       
Query: 122 ggaagtggtcaggtttccttaagatgtcagtactatgtcccctaccataccatgacaata 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ggaagtggtcaggtttccttaagatgtcagtactatgtcccctaccataccatgacaata 381

                                                                       
Query: 182 aacaaaattgtcttcagtattgtctagttgtcaaatgcctgccaagggaagagaaagtat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aacaaaattgtcttcagtattgtctagttgtcaaatgcctgccaagggaagagaaagtat 441

                                                                       
Query: 242 cctcagcagaaaccatagagctagatggagattaagtttggtcctctctagagtaagaaa 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 cctcagcagaaaccatagagctagatggagattaagtttggtcctctctagagtaagaaa 501

                                                                       
Query: 302 ttccaaagttatagatttctttaacaggcaaaataaatattttttacaaaataaatattt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttccaaagttatagatttctttaacaggcaaaataaatattttttacaaaataaatattt 561

                                                  
Query: 362 atgggcacatatatacctatgcatatggttattaataaa 400
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 562 atgggcacatatatacctatgcatatggttattaataaa 600


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 400
Length of database: 800
Length adjustment: 9
Effective length of query: 391
Effective length of database: 791
Effective search space:   309281
Effective search space used:   309281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)