BAC Information

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BAC

Clone NameMSMg01-087I13
Chromosome9 (Build37)
Map Location 90,364,558 - 90,365,030
singlet/doubletsinglet
Overlap genenone
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Downstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087I13.T7 (MSMg01no087_i13.b1)MSMg01-087I13.TJ (MSMg01no087_i13.g1)
ACCAG306538AG306539
length690714
length of high quality
(start - end)
499 (28 - 526)475 (71 - 545)
definitionCHROMAT_FILE: MSMg01no087_i13.b1 PHD_FILE: MSMg01no087_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:42 2005CHROMAT_FILE: MSMg01no087_i13.g1 PHD_FILE: MSMg01no087_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCTCACCT
GTGGCATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTT
AATCATCCAGGAAATGCAAATCAAAACAACCCTGATATTCCACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTTAGGTGACAGCAGATGCTGGTGA
GGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCT
TGTACAACCACTCTGGAAATCAGTTGGCGGTTCCTCAGAAAATTGGACAT
AGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAG
ATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCC
TTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGA
GGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACCTAG
CTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTG
GAGGGCATCATCCTGAGTGAGGTAACACAGTCACAAAGGAACTCACACCA
TATGTACTCACTGATAAGTGGATATTAGCCCAAAACCTAGGATACCCCAG
ATATAAGATACCATTTCCTAAAAACTTGATACTCAAGAAG
GATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTCCTGCAGAAGCCACAGAGGCTGTCCTG
TGTAGGTTGAGGTCCTAATCTGCTGAGATCCATCTCATAATGGAGGGTTA
GGAGATATTCTCAAAGTTGTCTAATTTAAATATTCATATTATCTAAAGCG
TTTGATGCAAGGACGGTGATATAGCTGTCTCTTGTGAGACTAGGCCAGGG
CCTAGCAAACACAGAAGTGGATGCTCACAGTCAACTATTGGATGGATCAC
AGGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCAAGGAGCTAAAGAGGT
CTGCAACCCTGTAGGTGCAACATTATGAACTAACCAGTACCCTGGAGCTC
TTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCACTG
GAAAGAGAGGCCCATTGGACAGGCAAACTTTATATGCCCCGGTACAGGGG
AACACCAGGGCCAAAAAATGGGAATGGGTGGGTAGGGGAGTGTTCTCTCC
CCTCTTTTTTTTTCCCCCCTTCTTTCTTTTCCCTCTTTTTTTCTTTCCTC
CCCCTCCCCTTTTTTTTTTCCTTCTTTCTTCCTTCTTTCTCCTTCCCCCC
CCTCTTTGTCCTTTTCTTCTTCCTTTTTCCCCCCTTTTCTTTTTTTTTCC
TCCCCCTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_i13.g1 MSMg01no087_i13.g1 CHROMAT_FILE:
MSMg01no087_i13.g1 PHD_FILE: MSMg01no087_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:42 2005
         (475 letters)



>mm_chr9_90364358_90365233
          Length = 876

 Score =  884 bits (457), Expect = 0.0
 Identities = 469/473 (99%), Gaps = 1/473 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcctgcag-aagccacagaggctgtcctgtgtaggttgaggtcctaatctgctgagat 59
           |||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcctgcagcaagccacagaagctctcctgtgtaggttgaggtcctaatctgctgagat 260

                                                                       
Query: 60  ccatctcataatggagggttaggagatattctcaaagttgtctaatttaaatattcatat 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccatctcataatggagggttaggagatattctcaaagttgtctaatttaaatattcatat 320

                                                                       
Query: 120 tatctaaagcgtttgatgcaaggacggtgatatagctgtctcttgtgagactaggccagg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatctaaagcgtttgatgcaaggacggtgatatagctgtctcttgtgagactaggccagg 380

                                                                       
Query: 180 gcctagcaaacacagaagtggatgctcacagtcaactattggatggatcacagggccccc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcctagcaaacacagaagtggatgctcacagtcaactattggatggatcacagggccccc 440

                                                                       
Query: 240 aatggaggagctagagaaagtatccaaggagctaaagaggtctgcaaccctgtaggtgca 299
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 aatggaggagctagagaaagtatccaaggagctaaagagatctgcaaccctgtaggtgca 500

                                                                       
Query: 300 acattatgaactaaccagtaccctggagctcttgtctctagctgcatatgtatcaaaaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acattatgaactaaccagtaccctggagctcttgtctctagctgcatatgtatcaaaaga 560

                                                                       
Query: 360 tggcctagtcggccatcactggaaagagaggcccattggacaggcaaactttatatgccc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggcctagtcggccatcactggaaagagaggcccattggacaggcaaactttatatgccc 620

                                                                
Query: 420 cggtacaggggaacaccagggccaaaaaatgggaatgggtgggtaggggagtg 472
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cggtacaggggaacaccagggccaaaaaatgggaatgggtgggtaggggagtg 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space:   402690
Effective search space used:   402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)