Query= MSMg01no087_m21.b1 MSMg01no087_m21.b1 CHROMAT_FILE:
MSMg01no087_m21.b1 PHD_FILE: MSMg01no087_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:03 2005
(474 letters)
>mm_chr9_22473176_22474050
Length = 875
Score = 789 bits (408), Expect = 0.0
Identities = 454/472 (96%), Gaps = 9/472 (1%)
Strand = Plus / Plus
Query: 8 gaattccagtctcttc-tc--ac-taaccatctggataacctagttaattccttaaagtc 63
|||||||||||||||| || || ||||||||||||| |||||||||||||||||||||
Sbjct: 208 gaattccagtctcttcttcatacataaccatctggatgtcctagttaattccttaaagtc 267
Query: 64 ttctgagatatggtttgtttgtttgttta-ttacaaaatgatgacatcattgtcctgtga 122
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 268 ttctgagatatggtttgtttgtttgtttatttacaaaatgatgacatcattgccctgtga 327
Query: 123 gacagttgaagtttatttaactgaaaatgtggttgttacaagagcctggtgtgtattagg 182
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 328 gacagttgaag----tttaactgaaagtgtggttgttacaagagcctggtgtgtattagg 383
Query: 183 tccctgaagaacaggaaaattgaactagatagagaaggatgtatgtagtatgagttctag 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tccctgaagaacaggaaaattgaactagatagagaaggatgtatgtagtatgagttctag 443
Query: 243 ctatcacagttaatgtatttcctgatccttgtgtgagtcactggaattctgtgcctttgt 302
|| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctgtcacagttcatgtgtttcctgatccttgtgtgagtcactggaattctgtgcctttgt 503
Query: 303 cttttttattatgacaagaatccttgtacacccacagtccttggctgatgtaatggatgc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cttttttattatgacaagaatccttgtacacccacagtccttggctgatgtaatggatgc 563
Query: 363 cattgttacagataccgccaacctcatgtcattgttggcattgtcgtcacagccaccatc 422
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 cattgttacagataccgtcaacctcatgtcattgttggcattgccgtcacagccaccatc 623
Query: 423 actagagagtacacacatagataggatcttttggtcctcaagtttcagggaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 actagagagtacacacatagataggatcttttggtcctcaagtttcagggaa 675
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 875
Length adjustment: 10
Effective length of query: 464
Effective length of database: 865
Effective search space: 401360
Effective search space used: 401360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no087_m21.g1 MSMg01no087_m21.g1 CHROMAT_FILE:
MSMg01no087_m21.g1 PHD_FILE: MSMg01no087_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:04 2005
(298 letters)
>mm_chr9_22638113_22638810
Length = 698
Score = 576 bits (298), Expect = e-169
Identities = 298/298 (100%)
Strand = Plus / Minus
Query: 1 cagataagagctccaaacgcgggcaaggagtgaactgatgaagagcgagccagcagagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 cagataagagctccaaacgcgggcaaggagtgaactgatgaagagcgagccagcagagag 439
Query: 61 caggaaggcatgctgtggagtaagggactcaagatgcaaataaaagggtgttgctctctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 caggaaggcatgctgtggagtaagggactcaagatgcaaataaaagggtgttgctctctc 379
Query: 121 tttggtaaataacgtgtgtgggcgtgtgtgcacatgcacgtattcgcgtgtacacataca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tttggtaaataacgtgtgtgggcgtgtgtgcacatgcacgtattcgcgtgtacacataca 319
Query: 181 ctcacacatacacacggcggcgggggggagggggatagcattataaaaagcagtcttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ctcacacatacacacggcggcgggggggagggggatagcattataaaaagcagtcttcag 259
Query: 241 tatttaaagcaagattcagcaacataatgaagtatttttaattgatgaattccaggca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tatttaaagcaagattcagcaacataatgaagtatttttaattgatgaattccaggca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
