Query= MSMg01no088_h12.b1 MSMg01no088_h12.b1 CHROMAT_FILE:
MSMg01no088_h12.b1 PHD_FILE: MSMg01no088_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:57 2005
(569 letters)
>mm_chr9_91791613_91792581
Length = 969
Score = 940 bits (486), Expect = 0.0
Identities = 542/582 (93%), Gaps = 37/582 (6%)
Strand = Plus / Plus
Query: 5 gaattcattccttcatgatgtagcttgtgcaataatcactcagttttcatattatatagg 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattccttcatgatgtagcttgtgcaataatcactcagttttcatattatatagt 264
Query: 65 tagacttatttattatttgttatattaaaatggaagtgaggtgggcagtggtggcacatg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tagacttatttattatttgttatattaaaatggaagtgaggtgggcagtggtggcacatg 324
Query: 125 cctttaatcccagcacttgggaagcagaggcagaggcagaggcagaggcagaggcagagg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctttaatcccagcacttgggaagcagaggcagaggcagaggcagaggcagaggcagagg 384
Query: 185 cagaggcagaggcagaggcaga---ag---------------cagaggcagaggcagagg 226
|||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 385 cagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagaggcagagg 444
Query: 227 cagaggcagaggcagaggcagagaagcagagaggcagagaggcagaggggcagaggtaga 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagaggcagaggcagaggcagagaagcagagaggcagagaggcagaggggcagaggtaga 504
Query: 287 agcagaggcagcggcagaggcagagaggcagaggcagaggcagaggcagaggcagagagg 346
||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 agcagaggcagaggcagaggcagagaggcagaggcagaggcagaggcagag------agg 558
Query: 347 cagaggcagaggcagagaggcagaggcagaggcagagaggcagaggcaggctattttctg 406
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 559 cagaggcagaggcagagaggcagag------------aggcagaggcaggctattttctg 606
Query: 407 agatcgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaa 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 agatcgaggccagcctggtctacagagtgagttccaggacagccagggctacacagagaa 666
Query: 467 accctgtctcgaaaaacaaacaaacaaaaaacaaacgaaaataaaatggaagtgagaaaa 526
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct: 667 accctgtctcgaaaaacaaacaaa-aaaaaacaaacaaaaataaaatggaagtgagaaaa 725
Query: 527 ttgtggtgggctttaactggggaaggaaaagaagagtaatac 568
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 ttgtggtgggctttaactggggaaggaaaagaagagtaatac 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 256
Number of extensions: 64
Number of successful extensions: 64
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 969
Length adjustment: 10
Effective length of query: 559
Effective length of database: 959
Effective search space: 536081
Effective search space used: 536081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_h12.g1 MSMg01no088_h12.g1 CHROMAT_FILE:
MSMg01no088_h12.g1 PHD_FILE: MSMg01no088_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:57 2005
(604 letters)
>mm_chr9_91846520_91847523
Length = 1004
Score = 563 bits (291), Expect = e-164
Identities = 300/303 (99%)
Strand = Plus / Minus
Query: 302 gggatactcttcagctgtaaagaaaaattaaattatgaaatttgcatgtaaatagatagg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1004 gggatactcttcagctgtaaagaaaaattaaattatgaaatttgcatgtaaatagatagg 945
Query: 362 cctatagaagattacattgagtgaggtgatacaaactcaaaagataagtaccaaatatta 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 cctatagaagattacattgagtgaggtgatacaaactcaaaagataagtaccaaatatta 885
Query: 422 agactctcatctgaaaatttttagacatgattatatagcatggagtaaccacagaaatca 481
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 884 agactctcatctgaaaatttttagacatgattatatagcatggagtagccacagaaatca 825
Query: 482 gtaatgtacaaagggatcatggatgaagaaaaatagctttgctttggtgggatacaagtg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gtaatgtacaaagggatcatggatgaagaaaaatagctttgctttggtgggatacaagtg 765
Query: 542 atattaagtgggagttgaaatagtgaggaagtagctccaaatggagaagagggacagaag 601
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 764 atattaagtgggagatgaaatagtgaggaagtagatccaaatggagaagagggacagaag 705
Query: 602 gaa 604
|||
Sbjct: 704 gaa 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
