Query= MSMg01no088_l03.b1 MSMg01no088_l03.b1 CHROMAT_FILE:
MSMg01no088_l03.b1 PHD_FILE: MSMg01no088_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:16 2005
(310 letters)
>mm_chr9_102190221_102190930
Length = 710
Score = 522 bits (270), Expect = e-153
Identities = 297/306 (97%)
Strand = Plus / Minus
Query: 5 gaattctggagtaagcatcccatatcagcctcatcgtacccatgtcttcttaatgttcag 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattctggactaagcatcccatatcagcctcatcgtacccatgtcttcttaatgttcag 451
Query: 65 tggtagaagtgcagactcccaggaattacatagcttgctttgtttgtagagcacaagaat 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tggtagaagtggagactcccaggaattacatagcttgctttgtttgtagagcacaagaat 391
Query: 125 ggcggagcagagaccccacactctctcctttcttcctgactccagtttggtccattacac 184
||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 390 ggcagagcagagaccccacactctctcttttcttcctgactccagtttggtccattacat 331
Query: 185 cagacaggcatgctggcttctctaatagcttgggaatcctgggatgggcatcctgtgagc 244
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 330 cagacaggcacgctggcttctctaatagcttgggaatcctgggatgagcatcctgtgagc 271
Query: 245 tcttcaccatgggttaccgtacggtgaaaaaggcctctgattaataatgtagcagagatt 304
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 270 tcttcaccatgggttaccgtatggtgagaaaggcctctgattaataatgtagcagagatt 211
Query: 305 agaaaa 310
||||||
Sbjct: 210 agaaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space: 211001
Effective search space used: 211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no088_l03.g1 MSMg01no088_l03.g1 CHROMAT_FILE:
MSMg01no088_l03.g1 PHD_FILE: MSMg01no088_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:16 2005
(411 letters)
>mm_chr9_102043870_102044681
Length = 812
Score = 696 bits (360), Expect = 0.0
Identities = 396/412 (96%), Gaps = 8/412 (1%)
Strand = Plus / Plus
Query: 1 cagggtttgactattcttcctgttccttaatctcttctcagagtgcccgtgtaaaaatct 60
|||||||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct: 208 cagggtttgactattcttcctgttccttaa-------tcagagtgtctgtgtaaaaatct 260
Query: 61 cccagctctctcagtcctgtcctgtggcatatgaactcttgggcatgcagtagagacaca 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccagctctctcagccctgtcctgtggcatatgaactcttgggcatgcagtagagacaca 320
Query: 121 gtggctgggctgccacagtctggtcatattctgtcctccagtggatacactgactgcaca 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gtggctgggctgccacagtctggtcacattctgtcctccagtggatacactgactgcaca 380
Query: 181 ctgtctcaaacatgtgaacaccatccatcaacccgaagacaagcattgtcggcccagacc 240
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 381 ctgtctcaaacatgtgaacaccatccatcaaccctaaggcaagcattgtcggcccagacc 440
Query: 241 acacactgaccctacacgatggccaccctctgcccctcatacaagccctt-gatactcct 299
||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 441 acacactgaccctgcacgatggccaccctctgcccctcatacaagccctttgatactcct 500
Query: 300 tagaggatgatgtcaccgaagcagtcattcttgtttgctagtgaagcaaggtgaacaatg 359
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 tagaggatgatgtcaccgaagcagtcattcttgtttgcaagtgaagcaaggtgaacaatg 560
Query: 360 accatgcttcatgcattcagctaaccaacaaagatgttcacacacacacaca 411
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 accatgcttcatgcattcagctaaccaacaaagatgttcacacacacacaca 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 812
Length adjustment: 9
Effective length of query: 402
Effective length of database: 803
Effective search space: 322806
Effective search space used: 322806
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
