GACTCCTATATGCAGAGATCCGCGGAATTCATCATTAATATCCAATAAAT
TTGATTGCAAACAAAACAATTCTTTAAAAATAAATTTCTTTATGTTTTTT
TAATCAACCAAGGGTGTTTAATTTGTACATTGATTTTATATACCTATAAA
TCCAAGAATTGTAAAAAGTTCTAGGGAGAGATGGATCATGAATGAAAAGG
GTTTAGGTAGGAAGCTTTGGTCCACACAATAATTTCATTGTACGTTTTTG
CTTTCTATTGTTTGTTAAATCCCATTATGTGTATATACACAATTCTATGA
AAATGTAATCTTTTTAAATTAAAAGATTTAATAATACGAACCACAAATTT
TCCTTCTAATAAGTTAAAAAAAATGCTAAAGAGATGGCTCAGTGTTTTAG
AGCACTGGGTATTAGTCCAGACATCCTGACTTCAATTCTGTGCACCAACA
TGGTGGTACACATTAATTTGCTAATTAAGTATTGGGAATTCAACTCCTTT
TTCTAGTCTCTATAAGTACTGCACATATGTGGTATATAAATATTCTGTTC
AGACAACACCTTTACCCATAAAATGAACATGAATGAATGTAAAAAATAAA
ATATCCATGTAAAAAACATTTTTATCANATCTACAAAAATCAGATTGTTA
AGTGTAAATAAAGTAAGAGGTAGCATCTCTCCGAGAGTTTG

ATTGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACTGGCCTAGAACTCAGAA
ATTGGCCTGCCTCTGCCTCCCCGTGCTTGGGTTAAAGGCTGGAGCCATCA
CTGCCCAGCAATTTTCTTTTTTTAAATTGGATATTTTATTTGTTTACATT
TCAAATGTTATCCCCTTTCCTGGTTTCCCCTCTGCAAACTCCCTATCCCA
TCTCCCTTACCCTGCTTCTATGAGGGTGCTCCCCCACCCACCCACCTACT
CCTGCATCACTACCCTAGCATTCCTCTACACTGGGGCATCAAGCCTTCAC
AGGAACAAAGGGCCTCCCCTCCCACTGATGCCAGATAAGGCCTCTTCAGC
TCCTTCAGTCCTTCTCCTATCTCCTCCATTGGGGTTCCTATCCTCAGTCA
GATGGTTGGCTGTGAGCATCTGCATCTGTATTGATCAGAATCTGGCATAG
CCTCTCAGGAGACAGGTTTTGTGTCTGCATGTGGGATGGATTTCCAGATG
GGGCAGTCTCTATTCCACTCTATGTTCCTGTATTTCCTTTAAACAGGAGC
AATTCTGGTCTAAACTTTTATAGATGGGTGGCTGGCCCCATTCCTCAACT
GAGGTTCTGTGCCTAACTTTTGGATATGGTCTCCCTCCCCTTATTGTTAA
ATTCATAAT

Query= MSMg01no088_l23.b1 MSMg01no088_l23.b1 CHROMAT_FILE:
MSMg01no088_l23.b1 PHD_FILE: MSMg01no088_l23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:20 2005
         (558 letters)



>mm_chr9_100697774_100698731
          Length = 958

 Score = 1023 bits (529), Expect = 0.0
 Identities = 547/553 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcattaatatccaataaatttgattgcaaacaaaacaattctttaaaaataaa 64
           |||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaattcatcattaatatataatgaatttgattgcaaacaaaacaattctttaaaaataaa 681

                                                                       
Query: 65  tttctttatgtttttttaatcaaccaagggtgtttaatttgtacattgattttatatacc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttctttatgtttttttaatcaaccaagggtgtttaatttgtacattgattttatatacc 621

                                                                       
Query: 125 tataaatccaagaattgtaaaaagttctagggagagatggatcatgaatgaaaagggttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tataaatccaagaattgtaaaaagttctagggagagatggatcatgaatgaaaagggttt 561

                                                                       
Query: 185 aggtaggaagctttggtccacacaataatttcattgtacgtttttgctttctattgtttg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggtaggaagctttggtccacacaataatttcattgtacgtttttgctttctattgtttg 501

                                                                       
Query: 245 ttaaatcccattatgtgtatatacacaattctatgaaaatgtaatctttttaaattaaaa 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 500 ttaaatcccattatgtgtatatacacaattctatgaaagtgtaatctttttaaattaaaa 441

                                                                       
Query: 305 gatttaataatacgaaccacaaattttccttctaataagttaaaaaaaatgctaaagaga 364
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 440 gatttaataatacgaaccacaaattttccttctaataagtttaaaaaaatgctaaagaga 381

                                                                       
Query: 365 tggctcagtgttttagagcactgggtattagtccagacatcctgacttcaattctgtgca 424
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 380 tggctcagtgttttagagcactgggtattagtccagacatcctgagttcaattctgtgca 321

                                                                       
Query: 425 ccaacatggtggtacacattaatttgctaattaagtattgggaattcaactcctttttct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccaacatggtggtacacattaatttgctaattaagtattgggaattcaactcctttttct 261

                                                                       
Query: 485 agtctctataagtactgcacatatgtggtatataaatattctgttcagacaacaccttta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agtctctataagtactgcacatatgtggtatataaatattctgttcagacaacaccttta 201

                        
Query: 545 cccataaaatgaa 557
           |||||||||||||
Sbjct: 200 cccataaaatgaa 188


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)