BAC Information

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BAC

Clone NameMSMg01-089B13
Chromosome9 (Build37)
Map Location 26,632,969 - 26,633,275
singlet/doubletsinglet
Overlap geneGlb1l3
Upstream geneB3gat1, BC038479
Downstream geneGm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089B13.T7 (MSMg01no089_b13.b1)MSMg01-089B13.TJ (MSMg01no089_b13.g1)
ACCAG307683AG307684
length765700
length of high quality
(start - end)
314 (94 - 407)495 (74 - 568)
definitionCHROMAT_FILE: MSMg01no089_b13.b1 PHD_FILE: MSMg01no089_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:47 2005CHROMAT_FILE: MSMg01no089_b13.g1 PHD_FILE: MSMg01no089_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNCCCCCCNNNNNNNTTNNNGGGAGAANNN
NAGATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACCGCG
GAATTCAAAGTGAGCAAAAAGGTAGGCTTTGGTTCTGAGAAACATGTGAC
TTCTCTTCATTTACTTGAAGCTTATAGCTATGAATGTTTGGGGGTTGAGA
GGATGGAAATGACCCACTGAAAAGTGGGCTATTTCATTACAAGAGCAGTG
ATGTTACTTTGTGCCCCCTCCTTTGTTCTCACTTTTCTTGTTATCTGAGG
TGGGAAAGTAGAATAGTTATGTTGGATGTTAGCCCACCTTAGATCAGGAC
TTAGTCTTCTTTCAGGATAATATCCTTATACTAAGTGGTGAAAGCTTTTA
GTCCTGTTGTATTATTACCCCCCCCCCCCCCATATGACAGTAGGTTTTAT
TAGTATTTGCTCTCTTGGCTGAAAAAAAAGAAAGGAAGCGGGGGGTGGGC
TGTATTTCTCTGTCCCTTACTTTGGAGAATATCCAGCACTTGTTGCTAGA
CTCTTCTCTGCTTCCCACCTACCGGACCAAAGGAAGTGATTAGCATCAAT
GCCCCTTTGCTGACCAATTTTACCCTCCACTATCTGGACACGAAAATTGA
GTTCTTTCCATAACTATGCTCCTCTTGATCATCCATTAATACCCCCTATC
TCCATACCCTTTGATATCATTCTTTGGAGCGCGAAAACCCTAAAAGATTG
ACGCAAGGAGTATTA
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAACAGACTGGGAGGAAG
AAGCAGCTCATTACCAGCCACATAAAGTGCTAGTTAATCGGTCAAGAAAA
AAGCCAAAAGCGGCTGGCGAAAGCCAGCATGCTGTTCAGCCTCCGGGCAG
TCGGCTTCAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCGTC
AGCCCTGCGCAGAGAGACAATGCGCAGAGAGACAATGCGCAGAGAGGCAA
TGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAACAGGC
ATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCCGGTAG
AATACGTGCAGATTAAAGAACTTGCCGAGTCGGTCCGTACATACGGAACC
AATGCTAATTTTACCTTGGTGCAGTTAGACAGGCTTGCCGGCATGGCACT
AACTCCTGCCGACTGGCAAACGATTGTAAAAGCCGCTCTCCCTAGTATGG
GCAAATATATGGAATGTAGAGCGCTTTGGCATGAGGCTGCACAAGCACAG
GCCCCGACCAAACGCAGCTGCTTTTGACTCCAGAGCAAAAAGATTGGACT
TTTGACTTGGTAACGGGGTCAGGGAGCTTATTCGGCTGATCAAACAACTA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_b13.b1 MSMg01no089_b13.b1 CHROMAT_FILE:
MSMg01no089_b13.b1 PHD_FILE: MSMg01no089_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:47 2005
         (314 letters)



>mm_chr9_26632762_26633475
          Length = 714

 Score =  511 bits (264), Expect = e-149
 Identities = 297/308 (96%), Gaps = 2/308 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcaaagtgagcaaaaaggtaggctttggttctgagaaac-atgtgacttctcttca 66
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 514 gaattcaaagtgagcagaaaggtaggctttggttctgagaaacaatgtgacttctcttca 455

                                                                       
Query: 67  tttacttgaagcttatagctatgaatgtttgggggttgagaggatggaaatgacccactg 126
           ||||||||||||||||||||||| |||||||| |||||||||||| ||||| ||||||||
Sbjct: 454 tttacttgaagcttatagctatggatgtttggaggttgagaggatagaaataacccactg 395

                                                                       
Query: 127 aaaagtgggctatttcattacaagagcagtgatgttactttgtgccccctcctttgttct 186
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 394 aaaagtgggctatttcattacaagagcagtgatgttcctttgtgccccctccttcgttct 335

                                                                       
Query: 187 cacttttcttgttatctgaggtgggaaagtagaatagttatgttggatgttagcccacct 246
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 334 cacttttcttgttatctgaggtgggaaagtagaatagttatgttggatgctagcccacct 275

                                                                       
Query: 247 tagatcaggacttagtcttctttcaggataatatccttatactaagtggtgaaagctttt 306
           |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 274 tagatcaggacttagtcttctttcagga-aaaatccttatactaagtggtgaaagctttt 216

                   
Query: 307 agtcctgt 314
           ||||||||
Sbjct: 215 agtcctgt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)