BAC Information

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BAC

Clone NameMSMg01-089I11
Chromosome9 (Build37)
Map Location 110,448,699 - 110,448,930
singlet/doubletsinglet
Overlap genenone
Upstream geneFbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5, Tmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9
Downstream geneSetd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089I11.T7 (MSMg01no089_i11.b1)MSMg01-089I11.TJ (MSMg01no089_i11.g1)
ACCAG308005AG308006
length706686
length of high quality
(start - end)
87 (54 - 140)234 (104 - 337)
definitionCHROMAT_FILE: MSMg01no089_i11.b1 PHD_FILE: MSMg01no089_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:22 2005CHROMAT_FILE: MSMg01no089_i11.g1 PHD_FILE: MSMg01no089_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTATTTCTAGAAAGGCGCGGAATTCTGCACCTTTTCACACTCCAGCATA
GGTCACCCCAGCCTGAGAGACTGAACTCAAACTTATGACCTCACCCCTAG
AGAAATCACAGGAGTGCCAACCTGAGGTTCTCAGTCCAACATGGGGGTGG
GGCAGATAATTCAGAAATGGCTATCAGAGAAAGGAAAAACGAGAAGAGAT
GCCCAAAGTCACAGAACCTGTAAATGGTGGTAGCCGATCTGGATCACGGT
TCTCCAGGCCTGTTCTGGAGCTCTTGCCAAGATTATAAGGTTTTTTTTGT
GAGAGCAGTACTGCTTCTAATACTGACTCTGACCTCTGCCCCCTTTCCTG
TCTCCCTCTCATAGTTCAGAGTCGGCTACACTTGTTGACCCACCCATAGT
TTTTTCTCACCTCCATCTGACGTATATCCATCATTAGAGTCGCCCCATTT
TTCTTACCTCCCTGACTCACTATTGATGATATCCCTATATCCCGGTTTTG
ACGCCTGTTTTCCCCCTCCCTTTTCCCCTTGTCTATTCTCACTTTTTATC
CGCCTTCCTCTTTTTTTTATCCCCTTTTCTTTCCCCTTCTTCCCCTTATT
TCCCCTGTTTTCCGTTTTCCCTTACCCCCTCTTTAAACATGGTTATTCTA
TTTTTTTTCCCCCCCTCTTTCCCTCGTGCCTTTTTTTTTCTCCCCTCCCC
CCTCTT
TGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACAGAGATCCACTTGCCTCTGCCTCCTGAGTACTAGGATTATTGTG
CCATCATGCTCAACTATGGGGCAAAATTTTAATTTGGATTTGAGTGTCTG
TCTTGATATTACCCATATATATATGCTTGCTTGCTTTAATTTGTGTCTAG
ATTTTTCTATTATTCTTTCAACAACCTAGGTTATGCCTTTAAATTCTGAC
CTCCACCATTTCAGAAACTTTGAGATAGTTTTGTCAGACAGATAATGTAT
AAGACTTCTTAGCTATATTTTGTTGTTCACATAGTTTTTTTATATCCCCC
CCCCCCACCAGTACCATGGTGTGTGTATCAGATAGTGGTGGCCCCCCAAC
ATAAAATAATTTCAGTTTCTAGTTTGACAGAATGCCTGATTCTCTTTTGA
CTGCTTTATCAGTAAAATGACATCTGTACGAGGCTAATTTGTACCATGGA
TGTTTATTATAACTTGTTCTTTTTTGTTCTTTGTTCATTTTACCCTCTGT
TCGGTTTTCCTCCTTCCCCTTAACTATTCCCCCCTCACTCCTTTTCTATT
TTTATTTCTTTTCCCTCATTTTTTTCCCTTATTCTTATTTTTTTCTATCC
TCCCCTTTCTTCTCTTAATCCCTTCCCTGTCCCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_i11.g1 MSMg01no089_i11.g1 CHROMAT_FILE:
MSMg01no089_i11.g1 PHD_FILE: MSMg01no089_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:22 2005
         (234 letters)



>mm_chr9_110448499_110449132
          Length = 634

 Score =  418 bits (216), Expect = e-121
 Identities = 228/232 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcatgctcaactatggggcaaaattttaatttggatttgagtgtctgtcttgatattacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcatgctcaactatggggcaaaattttaatttggatttgagtgtctgtcttgatattacc 260

                                                                       
Query: 61  catatatatatgcttgcttgctttaatttgtgtctagatttttctattattctttcaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catatatatatgcttgcttgctttaatttgtgtctagatttttctattattctttcaaca 320

                                                                       
Query: 121 acctaggttatgcctttaaattctgacctccaccatttcagaaactttgagatagttttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 acctaggttatgcctttaaattctgacctccaccatttcagaaactttgagatagctttg 380

                                                               
Query: 181 tcagacagataatgtataagacttcttagctatattttgttgttcacatagt 232
           |||||||||||||| | |||||||||||| ||||||||||||||||||||||
Sbjct: 381 tcagacagataatggagaagacttcttagttatattttgttgttcacatagt 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)