CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTTGTCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTACTACAAGGAGATAAGTATGGATCGATTCGCA
TTCTTCTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGCCGAAGACCAAGTG
ACCATAGTTGTCGCTTCCTCATTTTTGTATCCCCTTTTCTATCCCTTTGC
CCTATTTGCCTGTTTCTATACCAGTCCCTTTTAGTCTTTATCATAATTTG
TTCTCGCCTTAAGCTCTCACTATCTGGCCCGCCCGCCTTTG

CGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGAGAAAGGCAGTTATGGCTTCCAAA
CTAATCGAGGTATATGATTTTGCGGACAAAGAAGGACACATTCGGAGGTC
CAGAGGGTACATCGATTGGAGATGAGCAAGCACACAGACAGAAGCAGGGG
AAGCTGAGATGCAGATGAAATCCCCAAGGTGTAATGAAAAGATCACAAAT
TCAGGAATCACTCCCTCTACCACTCATAATAACCTTGGCCGACTTAATTG
TACCCGAAGATTGTTGAATTTTAGCTCTTTATATTTAAATCGTACACTCT
AGTGTCTATTCATTGAAAGATTGTGATAACTAACTGGGATAACACGCTTG
AAGATCAGACGCATGGCACGTATCAAATTGTGAATCACAATGTGTGTGCT
CCTCTGTTTCAAGCGAAAATACACATGATAGATAGAAACGCTGTTTGTGA
AGAAAGCAGATGACACATGTTGTGTAGCCACTCATCCACTTCAGGATGCT
CATTGGCTTATTTGGCTTCTCTGCAGGCAGCTGTTTTGTTGGGACTCCTC
TGACTCCTGAGCTCAGCCCTGCAAGCAAAGATTTCATAGAGAGATGGAAG
AACTAAACACCATTTACTTCGACTTCAAGATAAATGCTGGAATCAGGACA
GGAAA

Query= MSMg01no089_o13.g1 MSMg01no089_o13.g1 CHROMAT_FILE:
MSMg01no089_o13.g1 PHD_FILE: MSMg01no089_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:53 2005
         (549 letters)



>mm_chr9_29111941_29112889
          Length = 949

 Score =  984 bits (509), Expect = 0.0
 Identities = 539/549 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaagaaggacacattcggaggtccagagggtacatcgattggagatgagcaagcacac 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaagaaggacacattcagaggtccagagggtacatcgattggagatgagcaagcacac 260

                                                                       
Query: 61  agacagaagcaggggaagctgagatgcagatgaaatccccaaggtgtaatgaaaagatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacagaagcaggggaagctgagatgcagatgaaatccccaaggtgtaatgaaaagatca 320

                                                                       
Query: 121 caaattcaggaatcactccctctaccactcataataaccttggccgacttaattgtaccc 180
           |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 caaattcaggaatcaccccctctaccactcatagtaaccttggccgacttaattgtaccc 380

                                                                       
Query: 181 gaagattgttgaattttagctctttatatttaaatcgtacactctagtgtctattcattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagattgttgaattttagctctttatatttaaatcgtacactctagtgtctattcattg 440

                                                                       
Query: 241 aaagattgtgataactaactgggataacacgcttgaagatcagacgcatggcacgtatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 441 aaagattgtgataactaactgggataacacgcttgaagatcagacgcatggtaggtatca 500

                                                                       
Query: 301 aattgtgaatcacaatgtgtgtgctcctctgtttcaagcgaaaatacacatgatagatag 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aattgtgaatcacaatgtgtgtgctcctctgtttcaagtgaaaatacacatgatagatag 560

                                                                       
Query: 361 aaacgctgtttgtgaagaaagcagatgacacatgttgtgtagccactcatccacttcagg 420
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 aaatgctgtttgtgaagaaagcagatgacacatgttgtgtagccactcatccagttcagg 620

                                                                       
Query: 421 atgctcattggcttatttggcttctctgcaggcagctgttttgttgggactcctctgact 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 atgctcattggcttatttggcttctctgcagtcagctgttttgttgggactcctctgact 680

                                                                       
Query: 481 cctgagctcagccctgcaagcaaagatttcatagagagatggaagaactaaacaccattt 540
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 cctgagctcagccctgcaagcaaagatttcaaagagagatggaagaactaaacaccattt 740

                    
Query: 541 acttcgact 549
           |||||||||
Sbjct: 741 acttcgact 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space:   506121
Effective search space used:   506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)