Query= MSMg01no089_p21.b1 MSMg01no089_p21.b1 CHROMAT_FILE:
MSMg01no089_p21.b1 PHD_FILE: MSMg01no089_p21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:00 2005
(319 letters)
>mm_chr9_118815973_118816691
Length = 719
Score = 522 bits (270), Expect = e-152
Identities = 300/310 (96%)
Strand = Plus / Minus
Query: 5 gaattccaggtggctgaccacctgtgaccacctggttggggtccccaggtgacaaatttc 64
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 514 gaattccaggtggctgaccacctgtgaccacctggttggggtccccaggtgacaaacttc 455
Query: 65 tgaggcaggcatgccaatagagagggggttagtccccctcctgctgctcttggcatgaga 124
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 454 tgaggcaggcatggaaatagagagggggttagtccccctcctgctgctcttgggatgaga 395
Query: 125 tttaaatctcaggttttgaaatttcaagggtttgaacactttccacctcagcagagttcc 184
|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 394 tttaaatctcaggttttgaaattttaagggtctgaacactttccacctcagcagagttcc 335
Query: 185 aagccagtttctcgggtggcacaatccgtgtgctccacagggtggttacagcaaggcaca 244
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 334 aagccagtttctcaggtggcacaatccgtgtgccccacagggtggttacagcaaggcaca 275
Query: 245 tttgaccattgaagaggtggggtggggtgtccaagagatgggctaatagttaatggcata 304
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 tttgaccattgcagaggtggggtggggtgtccaagagatgggctaatagttaatggcatg 215
Query: 305 cccttgcttg 314
||||||||||
Sbjct: 214 cccttgcttg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space: 220100
Effective search space used: 220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_p21.g1 MSMg01no089_p21.g1 CHROMAT_FILE:
MSMg01no089_p21.g1 PHD_FILE: MSMg01no089_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:00 2005
(475 letters)
>mm_chr9_118672153_118673028
Length = 876
Score = 837 bits (433), Expect = 0.0
Identities = 468/485 (96%), Gaps = 12/485 (2%)
Strand = Plus / Plus
Query: 1 acttctgtgtattctgcaaatttaaagtgaggccagcccttcctgtttttatttaatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 acttctgtgtattctgcaaatttaaagtgaggccagcccttcctgtttttatttaatttg 254
Query: 61 ccactgtgagccaaggaaaggaaaaactgtgagttacttttttttttt-------ttttt 113
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct: 255 ccactgtgagccaaggaaaggaaaaactgtcagttactttttttttttttttttcttttt 314
Query: 114 ccagaggggaaaagcagctatggggtagatttccaagtcacatggctagccagctggtgc 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ccagaggggaaaagcagctatggggtagatttccaagtcacatggctagccagctggtgc 374
Query: 174 cacagtgatcaagcccagcttgcttagggcccttcagtgagaagtgagactaagtcaccc 233
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 375 cacagtgatcaagcccagcctgcttagggcccttcagtgagaagtgggactaagtcaccc 434
Query: 234 tcaactcctcccaaacggtaacgcgcgtcttctttaggcccggagaggtgttcctgcctc 293
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 435 tcaactcctcccaaacggtaacgcgtgtcttctttaggcccggagaggtgttcctgcctc 494
Query: 294 tggcccacggttgggtcctggctccagcccacccatgctgaacttttcatttagctttt- 352
||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 495 tggcccatggttgggtcctggctccagcccacccatgctgaacttttcattta--ttttt 552
Query: 353 -aattcttattttaaattttaatttaattttttcccttttcactttacatcccactcact 411
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 caattcttattttaaattttaatttaattttttcccttttcactttacatcccactcact 612
Query: 412 gccccc-tccccgtcaccccttcccacaatccttccccctctaccctcccctcctcctct 470
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gcccccctccccgtcaccccttcccacaatccttccccctctaccctcccctcctcctct 672
Query: 471 gagca 475
|||||
Sbjct: 673 gagca 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 876
Length adjustment: 10
Effective length of query: 465
Effective length of database: 866
Effective search space: 402690
Effective search space used: 402690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
