Query= MSMg01no090_b24.b1 MSMg01no090_b24.b1 CHROMAT_FILE:
MSMg01no090_b24.b1 PHD_FILE: MSMg01no090_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:11 2005
(484 letters)
>mm_chr9_29665561_29666445
Length = 885
Score = 814 bits (421), Expect = 0.0
Identities = 465/485 (95%), Gaps = 10/485 (2%)
Strand = Plus / Plus
Query: 1 agttatggtctgtttggtggtcagttattcagatgtgagtatctcattaaatggcccaac 60
||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 agttatggtctatttgatggtcagttattcagatgtgagtatctcattaaatgggccaac 260
Query: 61 acttgtcaaatatagtgagcaaaatgtagaaaataataatcactgtgtaaatgttagtta 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 acttgtcaaatatagtgagcaaaatgaagaaaataataatcactgtgtaaatgttagtta 320
Query: 121 ttagtattgatattattattaataatattcttcagattcccccacaacctctgtagtttc 180
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 321 ttagtattgatattattattaatactattcttcagattcccccacaagctctgtagtttc 380
Query: 181 cagagcaactaatagattgggaccagaagcagcttgaagaagggttgaggagtggtgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagagcaactaatagattgggaccagaagcagcttgaagaagggttgaggagtggtgatg 440
Query: 241 ttcctcagatatggtaaattagtaggggact-agactcagacagacatgagtatttccaa 299
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ttcctcggatatggtaaattagtaggggactcagactcagacagacatgagtatttccaa 500
Query: 300 tctttatattgtttcctgaacctcaatttcttagtctgctagacaggcctttccttctgt 359
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct: 501 tctttatattgtttcctgaaccttaatttcttagtctgctagacaggcctctccttctgt 560
Query: 360 ccaactcagagggctcattgtaaggagttaaaatgtcatacattcatggccaaatagaca 419
|||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 ccaactca---------ttgtaaggagttaaaatttcatacattcatggccaaatagaca 611
Query: 420 tacatttaagggtaaaaaatgttaaatactttttctctcttattcatatcaccattttct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tacatttaagggtaaaaaatgttaaatactttttctctcttattcatatcaccattttct 671
Query: 480 tctca 484
|||||
Sbjct: 672 tctca 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 885
Length adjustment: 10
Effective length of query: 474
Effective length of database: 875
Effective search space: 414750
Effective search space used: 414750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_b24.g1 MSMg01no090_b24.g1 CHROMAT_FILE:
MSMg01no090_b24.g1 PHD_FILE: MSMg01no090_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:11 2005
(240 letters)
>mm_chr9_29788335_29788974
Length = 640
Score = 412 bits (213), Expect = e-119
Identities = 231/237 (97%)
Strand = Plus / Minus
Query: 1 tgaccttagagcagctatttccaggggagggtcccttgtctttctatgaagtcatcccga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 437 tgaccttagagcagctatttccaggggagggtcccttgtctttctatgaagtcatcctga 378
Query: 61 ggcaccttgcccactggagagtttggctgacagaggcaaccgtgggagggacacccttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggcaccttgcccactggagagtttggctgacagaggcaaccgtgggagggacacccttct 318
Query: 121 ctcacatttagtatgctgattgttgattatgtgctgagaatacagtgtgttgtccttcag 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctcacatttagtatgttgattgttgattatgtgctgagaatacagtgtgttgtccttcag 258
Query: 181 tggcttacatttgagatattagagacaattaccgacaaactggtagagaacttttga 237
|| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 257 tgacttacatttgagatagaagagacaattacagacaaactggtagagaacttttga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
