Query= MSMg01no090_l22.b1 MSMg01no090_l22.b1 CHROMAT_FILE:
MSMg01no090_l22.b1 PHD_FILE: MSMg01no090_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:00 2005
(327 letters)
>mm_chr9_110174590_110175316
Length = 727
Score = 547 bits (283), Expect = e-160
Identities = 295/299 (98%)
Strand = Plus / Minus
Query: 26 gctggcctcgaactcagaaatttgcctgcctctgcctcccaagtgctggaattaaagcca 85
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 716 gctggcttcgaactcagaaatttgcctgcctctgcctcccaagtgctggaattaaaggca 657
Query: 86 tgccccaccacgcccagcaccacctatattttttaaggcagtgtttcacgtagcctgtgc 145
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tgccccaccacgcccggcaccacctatattttttaaggcagtgtttcacgtagcctgtgc 597
Query: 146 taccatgtgcagtgtatgctatcctagagactgaacccagggcttagtgtatgcttggca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 taccatgtgcagtgtatgctatcctagagactgaacccagggcttagtgtatgcttggca 537
Query: 206 agctctgtcaacatccgtgtcccaaaataacatctcagtgattggattccctgatgggga 265
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 536 agctctgtcaacatccgtgtcccagaataacatctcagtgattggattccctgatgggga 477
Query: 266 acaagacatccatccatgagtcatttagaaagaacaactcatatccaaaccataacacc 324
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 acaagacatccatccatgagtcatttagaaagaacaactcatatccaaaccataacacc 418
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 727
Length adjustment: 9
Effective length of query: 318
Effective length of database: 718
Effective search space: 228324
Effective search space used: 228324
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_l22.g1 MSMg01no090_l22.g1 CHROMAT_FILE:
MSMg01no090_l22.g1 PHD_FILE: MSMg01no090_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:00 2005
(292 letters)
>mm_chr9_110073602_110074293
Length = 692
Score = 499 bits (258), Expect = e-146
Identities = 288/306 (94%), Gaps = 14/306 (4%)
Strand = Plus / Plus
Query: 1 cttgaatacagcctttcccttgtacttacatgttgaaaaggtgggaagtaagctgtttca 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 cttgaatacagcctttcccttgtacttacatgttgaaaaggtgggaagtaaggtgtttca 260
Query: 61 ggagtcctgtcctgaaccatgtgtggtgccatttaggaggcaggggtgacagtactgctt 120
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 ggagtcctgtcctgaaccatgtgtggtgccatttaggaggcagggttgacagtactgctt 320
Query: 121 caggtttgagtctagcctactctagaaaacatgttctagtgtagcctgagctcaattcca 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttttgagtctagcctactctagaaaacatgttctagtgtagcctgagctcaattcca 380
Query: 181 agacacacagttattgtctctattggatctgaccacctctcccatttctgattg------ 234
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agacacacagttattgtctctattggatctgaccacctctcccatttctgattaaactta 440
Query: 235 ------g--gtgatagaacctggaactattaaactattgaatgttctgacaagcctgacc 286
| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcacagaagtgatagaacctggaactattaaactattgaatgttctgacaagcctgacc 500
Query: 287 attttg 292
||||||
Sbjct: 501 attttg 506
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
