BAC Information

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BAC

Clone NameMSMg01-091K12
Chromosome9 (Build37)
Map Location 104,670,745 - 104,670,916
singlet/doubletsinglet
Overlap geneCpne4
Upstream geneEG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921
Downstream geneMrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981, Pik3r4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091K12.T7 (MSMg01no091_k12.b1)MSMg01-091K12.TJ (MSMg01no091_k12.g1)
ACCAG309547AG309548
length711712
length of high quality
(start - end)
172 (115 - 286)39 (78 - 116)
definitionCHROMAT_FILE: MSMg01no091_k12.b1 PHD_FILE: MSMg01no091_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:14 2005CHROMAT_FILE: MSMg01no091_k12.g1 PHD_FILE: MSMg01no091_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCAT
GGTTCTCATAAGCAGGAATAGAAAGAAAGAGAGCAGATGTCTATGTCTTT
TAAGATGTGACCCCTGACATTATAACCCCCAAAGGTCATGGTAATAGGAA
TTGGAAACTTTTAGGGGGTAATTAGACAAAGAATCACTTTAGGAGTGGGA
TCAATGACCTCATGATAAAAACCCCAGGGCTCCTGAGCACCTTTCCTCAT
GGAAGACACAATACCAAGGTGCTGGCCCTAAGCCAGGGACTTGGTCTTTC
CGTGGTTAATTGCTATGAATGGCATCCCACTTCCCAGGTCCCTAGATATG
TTAAAATACTTTTCTCTTGCTGATAAGCTTACTAGTTCATTTATTTATTT
ACTCCCTCCCCCACTTACTTATTAGCTGTCTTATTGCATTTATTGTCCCT
TGAGCAGACTACTTTATCTTGTGTTCCTCTTATCTTCACTTTTCTGAGCC
ATATCCACCCCTATATACATATATGGTTCACCGATTATTCCTCATCCCTG
TCCTTCTGCGATCCTTGATAATGTTTCCCTTTCACCGTCTTTTTCTCTGT
TCTTTCCACTATCCTCTTGTATCTCTTCTGCTCCCTGTCCGCTCTTTTTA
CTTCTCCTATCCCCTGTCTTTTTCCCCGCTTTTCCCTTTTTCTCTTTCCC
TCTCCCTCTCC
ATTTCGATATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGTATGACTACTGATGATGG
AGTTGAAACTAAATATTTGGCCGTGAAGTAACTTTGAGATGAGAACCATG
AAGTTGGTATTTAGCTTGGGGCTGGAAAAGTGATTCTGTTAAGACAAACT
TATAATACCTCCTGAAAGATAGTTGTCAAATACTCAGAGACTGTTTGGCC
AATGCGTATTCATTACATTGACAAAACACAGAGTCGGTTACTAAAAATTG
TCAGTCTCCCACTGTCTTTAGTAATAAACAGGAGAGTTGGGTATTATAGA
CCAAGCAGGTGCTTTACCTAGAAGAAGCTGGATCCATGGGTATCAGGGTC
ATGCAAGGACCATCCCACCAGTATTTGGATAGACCGTGTTGAACTATATG
CTGCAGGATAAGCTGTCTTACACTCTAACAGGGATGATGAGTAATTCTCC
CCTTTTGCTGCTTTCTGCTCTCCCTATTGTTACCACTTTGCTGAGCGTTC
GCTAGTTGTCACCGAGACCTTTGATCCTTTCTTTTTCCCCCCACATTCCC
GCTTTCGACCTCTTCACTCTTTCCAATCAACCATTTGAAAACACCTTTTC
CCGTTATTCATGTGCTCAGACCTTACCTCATCGTAATTCCCCTATTTTTT
TGAACTCCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_k12.b1 MSMg01no091_k12.b1 CHROMAT_FILE:
MSMg01no091_k12.b1 PHD_FILE: MSMg01no091_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:14 2005
         (172 letters)



>mm_chr9_104670545_104671116
          Length = 572

 Score =  317 bits (164), Expect = 2e-91
 Identities = 170/172 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgacattataacccccaaaggtcatggtaataggaattggaaacttttagggggtaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tgacattataacccccaaaggtcatggtaataggaattggaaacttttagggggtaatta 313

                                                                       
Query: 61  gacaaagaatcactttaggagtgggatcaatgacctcatgataaaaaccccagggctcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 312 gacaaagaatcactttaggagtgggatcaatgacctcatgataaaaaccccagggttcct 253

                                                               
Query: 121 gagcacctttcctcatggaagacacaataccaaggtgctggccctaagccag 172
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 252 gagcacctttcctcatggaagacacaacaccaaggtgctggccctaagccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)