Query= MSMg01no092_b06.b1 MSMg01no092_b06.b1 CHROMAT_FILE:
MSMg01no092_b06.b1 PHD_FILE: MSMg01no092_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:48 2005
(473 letters)
>mm_chr9_10388837_10389709
Length = 873
Score = 816 bits (422), Expect = 0.0
Identities = 461/474 (97%), Gaps = 2/474 (0%)
Strand = Plus / Minus
Query: 1 acaataaactattcactgcaagagatgggaatctttcaatata-atgcctacattatgat 59
||||||||||||||||||||||||||||||||||||||||| | ||| |||| ||||||
Sbjct: 673 acaataaactattcactgcaagagatgggaatctttcaata-acatgaatacagtatgat 615
Query: 60 cttcatgaccccactgtattggaacctgtttcaagctttgcctttcaaatatagagccca 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cttcatgaccccactgtattggaacctgtttcaagctttgcctttcaaatatagagccca 555
Query: 120 ttccaatacattaggtagaatctaagggagaattaggatttcaagatttgctcacattgt 179
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 554 ttccaatacattaggtagaatctaagggagagttaggatttcaagatttgctcacattgt 495
Query: 180 ctgagttacaactttacttaatacaaccttctcaattcagacacaattaaaaatctgaaa 239
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ctgagttacaactttacttaacacaaccttctcaattcagacacaattaaaaatctgaaa 435
Query: 240 agtattaggtggtaaggactgcaaaatcttttaatgttggcctttgtgaaattcttccca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agtattaggtggtaaggactgcaaaatcttttaatgttggcctttgtgaaattcttccca 375
Query: 300 gagtccaggtagtataaacaaaattaaggtgtttggaggataaataaagaacatcactat 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 374 gagtccaggtagtataaacaaaattaaggtgttttgaggataaataaagaacatcactat 315
Query: 360 aatattatagtagagtaattttgttatttttggattcccttcacaactttgatagacatt 419
||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||||
Sbjct: 314 aatattatagtagagtaattttgttatctttggattcccttcagaattttgatagacatt 255
Query: 420 cctgagataacccatttcctaaaccgtaccatcatcttataccacaagaacaga 473
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 254 cccgagataacccatttcctaagccgtaccatcatcttataccacaagaacaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_b06.g1 MSMg01no092_b06.g1 CHROMAT_FILE:
MSMg01no092_b06.g1 PHD_FILE: MSMg01no092_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:48 2005
(493 letters)
>mm_chr9_10249558_10250451
Length = 894
Score = 884 bits (457), Expect = 0.0
Identities = 485/495 (97%), Gaps = 3/495 (0%)
Strand = Plus / Plus
Query: 1 tctaaatttgtgtcccttctatacaaataaacttatgtgaagaa--tttcccatgagtga 58
|||||||||||||||||||||||||||||||||||||||||||| | | | ||||||||
Sbjct: 201 tctaaatttgtgtcccttctatacaaataaacttatgtgaagaaagtatac-atgagtga 259
Query: 59 agttttatacacatgaacatggaaatatggcaattgagaccatgagttcctgtgaggcag 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agttttatacacatgaacatggaaatatggcaattgagaccatgagttcctgtgaggcag 319
Query: 119 aagcatgcctaaagattctggttacatccactcataagcacaggtcagaaagagtagttg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aagcatgcctaaagattctggttacatccactcataagcacaggtcagaaagagtagttg 379
Query: 179 gcatatgtttattttctaaaactgtgccaaagacacacatactgcattcatataactgca 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcatatgtttattttctaaaactgtgccaaagacacacatactgcattcatataactgca 439
Query: 239 tgctatcagcaacaaatccacttaagtagaacaatggcttctggaccacctatatcatgc 298
||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||
Sbjct: 440 tgctatcagcaacaaatccacttcagtagaacaatggcttctggaccacccacatcatgc 499
Query: 299 atttcttattgtaccacagttgctgacatgttatagccgcttactcaatgcaccaacatt 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 500 atttcttattgtaccacagttgctgacaagttatagccgcttactcaatgcaccaacatt 559
Query: 359 ggattctattctcacgaattctcttgaataaacacaacttcagttcatgatttgaaacaa 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggattctattctcacgaattctcttgaataaacacaacttcagttcatgatttgaaacaa 619
Query: 419 aattaggaatttttagagctacaaatggttctagaaatttctttctctgcctttgatcca 478
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 aattaggaatttttagagctacaaatggctctagaaatttctttctctgcctttgatcca 679
Query: 479 gaaacattttaatgc 493
|||||||||||||||
Sbjct: 680 gaaacattttaatgc 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 894
Length adjustment: 10
Effective length of query: 483
Effective length of database: 884
Effective search space: 426972
Effective search space used: 426972
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
