BAC Information

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BAC

Clone NameMSMg01-092B08
Chromosome9 (Build37)
Map Location 66,131,357 - 66,131,648
singlet/doubletsinglet
Overlap genenone
Upstream geneClpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
Downstream geneHerc1, Fbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092B08.T7 (MSMg01no092_b08.b1)MSMg01-092B08.TJ (MSMg01no092_b08.g1)
ACCAG309858AG309859
length769750
length of high quality
(start - end)
292 (152 - 443)42 (136 - 177)
definitionCHROMAT_FILE: MSMg01no092_b08.b1 PHD_FILE: MSMg01no092_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:49 2005CHROMAT_FILE: MSMg01no092_b08.g1 PHD_FILE: MSMg01no092_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCCCCNNNNCCCCCCCCCCCCCCNNCCCACTCTATAAXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATACATTTCCTGAAG
ATTCATGACCTCTGCCTCCAAGGGGCCCCTCAAAGGCAGCCTACAGTATC
ACCCCATGGACTTCAAAGTCCAGAACCAAACCCTGGCTCCACTATCTACC
AGCCTTGTCTTATTCAGCATAGCTTCCAAGGTCCTCCACTTCCTCATCTG
CAAAGGTGGTAGGTAAGTCAGGTAAAGTACACACAAGAGATTAGAACAAT
GCCTTTGTATAACATGATAAACTCATGTCTTGATAAACATGAGTTCTCTT
CCTAGGATTGCCTACTGATAACTTAGCTCTCCCCTGGCACTAGAGAAGGC
AGCATGGCTGCTATGCAGGTTCAAGCCTTGGAAATGTTGAGGGAGACACA
ATTTATTTAGTGCCTGTATGTGTGTATTCATGCGGGTGAGCATGAATGTG
TATGTATGCATGCACACATACCCATGCACATGTGCACATTATAGCAGGGG
TGTGGAGGTTCAAGGTCAACTTTCGAAAGTCATTTCTCTCCTTCCACCAT
TTGGATACTGGGGATTGAGATTAAATTTTGGCAGAATGACCCTTTTAACC
CCATAATTCAACTCTCTGTCTTCCTCCCCTTGTATTTTCCCAGTTGTTAT
ATGAAGAAATTAAAATTTT
NNNNAACGGNNNNNNNNNNNNNNNNNNNNNNCCCCCCCNNNAACCCNCGC
CTTNTNNTTTTCTATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCACCAGGCTTGT
ATGGCAAGCACTTCTACGTACTGAGCCTTCTCACAGCCGAGTTTTGTGGT
TTTAAAAGAAACTGATCTAAGTGGGGTGTGCTGTGCACATCTTTGATCCC
AGCACTTGGATCTCTGAGTTTGAGGCTGGCCTGGTCTACAAAGTAAGTTC
CAGGGTGCTGAGGGCTGTTACACAGAGAAACCTTGACTTGAAAAACTGAG
AGACAGACAGACAGGCAGACAGACTGGTAGGTATTCTTAGAGAGAGAGAG
AGACAGAGACAGAGACAGATATTCTGAATTGAACTACACGGTCTCTAAGG
TCCCTATTAGCTATAATTGTTCTGTTTTCCTCTTGAAAACTCTTGATCTC
TGGGCCGAATCTGTGATGCCCTCTGCACAGGCTGGTTTTGGTCTCATCCT
CAGCCACAGGATTTGCAGCAGTTTTGTGTTTGTATCAAAAGCTCTTGTAC
TTATGAGTTGACTAATTTGTGGTGTTAACAGGGTTAGACCAGACTTCTTT
ACTGTTGTTACAACTGTTTAATAATCTATGGTTTAACCCTGGATAAGGGC
GATGCTCTTCTTATTTAAAAACCCTAATTTTTTTTGTCTCATTTTTTGTC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_b08.b1 MSMg01no092_b08.b1 CHROMAT_FILE:
MSMg01no092_b08.b1 PHD_FILE: MSMg01no092_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:49 2005
         (292 letters)



>mm_chr9_66131157_66131848
          Length = 692

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcatgacctctgcctccaaggggcccctcaaaggcagcctacagtatcaccccatggac 60
           ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||
Sbjct: 492 ttcatgacctctgcctccaaggggcccctcaaaggcagcctacagtaacagcacatggac 433

                                                                       
Query: 61  ttcaaagtccagaaccaaaccctggctccactatctaccagccttgtcttattcagcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttcaaagtccagaaccaaaccctggctccactatctaccagccttgtcttattcagcata 373

                                                                       
Query: 121 gcttccaaggtcctccacttcctcatctgcaaaggtggtaggtaagtcaggtaaagtaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 372 gcttccaaggtcctccacttcctcatctgcaaaggtggtaggtaagtcagggaaagtaca 313

                                                                       
Query: 181 cacaagagattagaacaatgcctttgtataacatgataaactcatgtcttgataaacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cacaagagattagaacaatgcctttgtataacatgataaactcatgtcttgataaacatg 253

                                                               
Query: 241 agttctcttcctaggattgcctactgataacttagctctcccctggcactag 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 agttctcttcctaggattgcctactgataacttagctctcccctggcactag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)