Query= MSMg01no092_b22.b1 MSMg01no092_b22.b1 CHROMAT_FILE:
MSMg01no092_b22.b1 PHD_FILE: MSMg01no092_b22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:52 2005
(604 letters)
>mm_chr9_26377885_26378888
Length = 1004
Score = 1079 bits (558), Expect = 0.0
Identities = 582/596 (97%), Gaps = 10/596 (1%)
Strand = Plus / Plus
Query: 9 ggtgaacatgaagatttcttccaagaggaattgaagtagctacaaactaaccaattcaac 68
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 209 ggtgaacatgaagatttcttccaagaggaattgaagtagctacaaactaaacaattcaac 268
Query: 69 aacaccacaaaatcagagtgctttgacgaagctctgctgtcaggggtcttgtcatccaat 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aacaccacaaaatcagagtgctttgacgaagctctgctgtcaggggtcttgtcatccaat 328
Query: 129 atgctgaggacaaaaagatatggacaagacttgattattgttctatttaaattttctaat 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atgctgaggacaaaaagatatggacaagacttgattattgttctatttaaattttctaat 388
Query: 189 gtatatatatatatatatatatccacaatagacactaaagagaattactaaatcccttta 248
|||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtatatatatat----------ccacaatagacactaaagagaattactaaatcccttta 438
Query: 249 aatggttttaaaatactttgagctgtactacagagcaattgtgataaaaactgcatggta 308
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 439 aatggttttaaaatactttgagctgtactacagagtaattgtgataaaaactgcatggta 498
Query: 309 ctggtatagcgacagacaagtagaccaatggaatagaattgaagacccagaaatgaaccc 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ctggtatagcgacagacaagtagaccaatggaatagaattgaagacccagaaatgaaccc 558
Query: 369 agacatctatagtcacttgatcgttgacaagagagcaaaaaccatccagtggaaaaaaaa 428
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agacatctatggtcacttgatcgttgacaagagagcaaaaaccatccagtggaaaaaaaa 618
Query: 429 gacagcattttcaacaaatggaactgacacaactgggggttatcatgtagaggaatgtga 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 gacagcattttcaacaaatggaactgacacaactgggggttatcatgtagaggaatgtga 678
Query: 489 attgatccattcctatctccttgtactaaggtcaaatctaagtggatcaaggaactccac 548
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 679 attgatccattcctatctccttgtactaaggtcaaatctaagtggatcaacgaactccac 738
Query: 549 ataaaaccagagacactgaaacttatagaggagaaagtagggaaaagcctcgaaga 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 ataaaaccagagacactgaaacttatagaggagaaagtagggaaaagcctcgaaga 794
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no092_b22.g1 MSMg01no092_b22.g1 CHROMAT_FILE:
MSMg01no092_b22.g1 PHD_FILE: MSMg01no092_b22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:52 2005
(561 letters)
>mm_chr9_26447102_26448063
Length = 962
Score = 1009 bits (522), Expect = 0.0
Identities = 552/562 (98%), Gaps = 1/562 (0%)
Strand = Plus / Minus
Query: 1 gtatctacaaggtaactatgtctgtgtgctgagtaggtttatggtacgggaatgagggaa 60
|||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct: 762 gtatctacaaggcaactatgtctgtgtgctgagtaggtttagggtatgggaatgagggaa 703
Query: 61 ggattcaggctcatctcactcattgaccattagtgactcagaaagggtgtgtgtgtgtaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 ggattcaggctcatctcactcattgaccattagtgactcagaaagggtgtgtgtgtgtaa 643
Query: 121 tgtgagagacctcttgaggatgttgtcctagggatggagggaaacaacggagcttgtgga 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 642 tgtgagagacctcttgaggatgttgtcctagggatggagggaaacaacggatcttgtgga 583
Query: 181 gtgtcaactcagaagcacacattttagacttgttcgaataaagaacagttgctgagatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 gtgtcaactcagaagcacacattttagacttgttcgaataaagaacagttgctgagatga 523
Query: 241 cttggccttgtggagatgacaatgacagttgtgttgaagactaaaaatccatgagcacac 300
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 522 cttggccttgtggagatgacaatgacagttgtgttgaagactaaaaaagcatgagcacac 463
Query: 301 agctacacatatgtgaagggat-aaaaaaataagatggggctacaaatggcaagaaaggc 359
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 462 agctacacatatgtgaagggataaaaaaaataagatggggctacaaatggcaagaaaggc 403
Query: 360 acagaagcttgaggtctgtagtcacaagagctagttgcaggacactgggtgcagaaagcc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 acagaagcttgaggtctgtagtcacaagagctagttgcaggacactgggtgcagaaagcc 343
Query: 420 tgcctcccatgaggtctgaggacagcgtggacttgatgcagatatggagaatttccagtg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 tgcctcccatgaggtctgaggacagcgtggacttgatgcagatatggagaatttccagtg 283
Query: 480 atctgggccatgttggatgtgaaacacgagctcttggtggaacagaccatagcaatccaa 539
|||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 282 atctgggccacgttggatgtgaaacatgagcccttggtggaacagaccatagcaatccaa 223
Query: 540 agcatacactttggaaaagtac 561
||||||||||||||||||||||
Sbjct: 222 agcatacactttggaaaagtac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 962
Length adjustment: 10
Effective length of query: 551
Effective length of database: 952
Effective search space: 524552
Effective search space used: 524552
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
