BAC Information

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BAC

Clone NameMSMg01-092D03
Chromosome9 (Build37)
Map Location 102,745,822 - 102,745,926
singlet/doubletsinglet
Overlap geneRyk
Upstream geneEphb1, 9630041A04Rik, Ky, LOC664843, Cep63, Anapc13, Amotl2, EG434510
Downstream geneSlco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092D03.T7 (MSMg01no092_d03.b1)MSMg01-092D03.TJ (MSMg01no092_d03.g1)
ACCAG309943AG309944
length715716
length of high quality
(start - end)
108 (133 - 240)155 (134 - 288)
definitionCHROMAT_FILE: MSMg01no092_d03.b1 PHD_FILE: MSMg01no092_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:58 2005CHROMAT_FILE: MSMg01no092_d03.g1 PHD_FILE: MSMg01no092_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAATGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCAGAGCTTGGGAGGGTAAGGCAGGAGGATCAGAAGTTCAG
ATCACTACACCACTTGGTAAGGGTATACCCAGGACTCTGGATGTTGTTGC
AGCTCCCCGGGTGAGTTCAATGGGAGCCGGGTAGACTATTATTACCCTTC
CCAGAAACAGAGTAGAAAGCGTGCACTTCATAGCTTCGTAACTGCATGCA
TCTGAGACCTCCAGCAAATTGTGTATTTTTCCAGAATCTTGGTTTTATCT
ATTTAAAATGTAAACAATGTGCCATATGCTGCTGACAAACATGTGTGAAA
TACCTGGTGTGTATTTTTTTTGTTAGCTCTCTCCAGATTATGGGCATCTC
CCTAGTTAAGAACTATACTCATTCTATTACAGATTAAAATGCAAGGATGA
CCGTCTCTCGGCTTTGTTATTGCTGGCTTTAGCCAACCCTATTCTTCAGT
ATTTGTTTACATCTCACCCCTTCCCTTTCACACCACTCACTTTAATTTTT
ACGCCCGTCCGTCTTTATATTTCCTTCCCTTTGGATTTGTTGCTTCACTT
TCCCCCCCAACTACACCCCTCTTTCTCTTCCCCGGGATGATCTCTCCCTT
CTCTTTCCCCTCTTTTCGTCTGCACTTTTTTTATCTTCTTTTTTACCCTG
GTCTCCGATGGCTCG
NCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTGCCAGTGCACACATGCACA
CATGAAGCAGCTCACAATCTGCCTGCACCTCAGCTCCAGGGTATCCAATG
CCCCTTTCTGCCTCTACAAGCACACACATGGCACACACACAAATAAATAA
AAGTATTCTTATTTATTTATTTTATATGTATGCGCTGTTGTGCGTTTGAA
TAAGAATGACCCCCACAGACATGCATTTGAATGCTTAGGCAGTAATGTTT
GAAGATATGGCCTTGTTGGAGGAAGTGTATCACTACCTGTGGGCTTTGGG
TTTAGTTTTGCTTTGTTTTTTCTAAAGCCACCTTGTTTCTCTGCGTATTT
CTGGCTTTCTTGAAACTGACTCTCTACACTAAGATGGCCTAAAACTCACC
GAGACCTGCCTGCTTCTGCCCCCCCGAGTGCTGGTATTTCACGACGGTGC
CTACCCTGTTATTACAACCACCCATCTGGACCTGATCCTTTCACTCCCCA
TTCCACCCCCAGGATTTCTCTCATGCCCGCCTGCAAATCCTAAACTCTGA
ATCCTCCCTTATTTCCTGTACCTTCTTAACCCCTTATTCCCCTCTCTGCC
CTCTCTCCTGTGTCCCCCAATGCACCTCCACCCCCCCCCCCGCCTCCCCT
CCCCCCACTCCACACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_d03.b1 MSMg01no092_d03.b1 CHROMAT_FILE:
MSMg01no092_d03.b1 PHD_FILE: MSMg01no092_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:58 2005
         (108 letters)



>mm_chr9_102745622_102746126
          Length = 505

 Score =  186 bits (96), Expect = 4e-52
 Identities = 104/108 (96%), Gaps = 3/108 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gactctggatgttgttgcagctccccgggtgagttcaatgggagccgggtagactattat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||
Sbjct: 305 gactctggatgttgttgcagctccccgggtgagttcaatgggagccgggtagac---tat 249

                                                           
Query: 61  tacccttcccagaaacagagtagaaagcgtgcacttcatagcttcgta 108
           |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 248 tacccttcccagaaacagagtagaaagcgtgcacttcagagcttcgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 108
Length of database: 505
Length adjustment: 8
Effective length of query: 100
Effective length of database: 497
Effective search space:    49700
Effective search space used:    49700
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)