Query= MSMg01no092_h21.b1 MSMg01no092_h21.b1 CHROMAT_FILE:
MSMg01no092_h21.b1 PHD_FILE: MSMg01no092_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:22 2005
(170 letters)
>mm_chr9_85980023_85980587
Length = 565
Score = 273 bits (141), Expect = 5e-78
Identities = 159/167 (95%), Gaps = 7/167 (4%)
Strand = Plus / Minus
Query: 5 gaattcctgtaactctcttccatcccaggcctccagctagtcaccagagatgttccccaa 64
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaattcctgtaac-ctcttccatcccaggcctccagctagtcaccagagatgttccccaa 307
Query: 65 ctctccccattcccc-ctgatttctattctcattcccagccctgtctggatggagagagg 123
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ctctcccca--ccccactgatttctattctcattcccagccctgtctggatggagagagg 249
Query: 124 aaactgggtaagggaggagttgaggaagaggttggagatggtgatca 170
|||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 248 aaactgggtaag---ggagttgaagaagaggttggagatggtgatca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 565
Length adjustment: 8
Effective length of query: 162
Effective length of database: 557
Effective search space: 90234
Effective search space used: 90234
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no092_h21.g1 MSMg01no092_h21.g1 CHROMAT_FILE:
MSMg01no092_h21.g1 PHD_FILE: MSMg01no092_h21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:22 2005
(448 letters)
>mm_chr9_85828238_85829085
Length = 848
Score = 804 bits (416), Expect = 0.0
Identities = 440/448 (98%)
Strand = Plus / Plus
Query: 1 agaaatgtggtgcaaatgcagatgaagataaatagcacagaagccatttgaggcaggcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaatgtggtgcaaatgcagatgaagataaatagcacagaagccatttgaggcaggcag 260
Query: 61 attcataggggaaattagaagctgccatcaggagagtcaatggtgagttcactaatccta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attcataggggaaattagaagctgccatcaggagagtcaatggtgagttcactaatccta 320
Query: 121 actttcacccaggataaatggaatcctgcgcctctcctccaattctctctaaagttaggc 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 321 actttcacccaggataaatggaatcctgcgcctctcctccaattcactctaaagttaggc 380
Query: 181 ccatgcctctggagacaatgaggaggaaggggcctttttttaccaccttccctatcccca 240
||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ccacgcctctggagacaatgaggaggaaggggcctctttttaccaccttccctatcccca 440
Query: 241 ggttgaattggctgttgctgtgacattttgagatgtcttttataaacttggagcatgttt 300
|| || |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 ggatgtattggctgctgctgtgacattttgagatgtcttttataaacctggagcatgttt 500
Query: 301 tccacttttccaactaaaggaagagctaacaggggctctgtatgatggagggatattatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccacttttccaactaaaggaagagctaacaggggctctgtatgatggagggatattatc 560
Query: 361 ttgctctgctctgagtaatgactacttgatgttagactgatcttcagatgagtggcaaaa 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgctctgctctgaataatgactacttgatgttagactgatcttcagatgagtggcaaaa 620
Query: 421 attgtctactagattccagcagtgcaag 448
||||||||||||||||||||||||||||
Sbjct: 621 attgtctactagattccagcagtgcaag 648
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space: 367044
Effective search space used: 367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
