BAC Information

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BAC

Clone NameMSMg01-092P18
Chromosome9 (Build37)
Map Location 47,869,665 - 47,869,954
singlet/doubletsinglet
Overlap genenone
Upstream geneCadm1, LOC100043303
Downstream geneD930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092P18.T7 (MSMg01no092_p18.b1)MSMg01-092P18.TJ (MSMg01no092_p18.g1)
ACCAG310541AG310542
length728743
length of high quality
(start - end)
290 (175 - 464)181 (195 - 375)
definitionCHROMAT_FILE: MSMg01no092_p18.b1 PHD_FILE: MSMg01no092_p18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:01 2005CHROMAT_FILE: MSMg01no092_p18.g1 PHD_FILE: MSMg01no092_p18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNCCCCCGCCCCTCCCCCTCCCCGCGNCCCTTAAA
AAAAAACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCC
GCGGAATTCAACATTCCATGTTATGTTCTAACTTGTATTTCACAGCTGTT
CTGCAGAATAGATCTGATAATGCTCAGCGTAGAGATGGGGACATGAAGGT
GAACTCAGGTGTTTAAGATGGTGAAATGTGGCAGACTAGGGTGTCACTGT
AGATCTTTCTGATATTAAAACCTCTCACCACTATTTTGTGGTTCATCCTT
GCTATGTAGCTATGCCCCTTCAAGACCATAAAAATCTTAGGTTGTATGCT
AAATTTGGGAGATCATGGCTTATACATTGAAGCAGGCCTGGAAAAGTCAT
GAATTGGAATGACGGACATGAACCAGACACTGGAATAGTACACTTTGTCT
GCTAATGCCACGGGCGCCGGTAAGCAGTTGGCAGCAGTATAAACAAGTTT
GAGCTAAAGTAGCAGGCTTTCCAGAGTGTGGGTAGATGCATTTGCAGGAC
ACTAGAGGTCGTTATAAACTTAGTGGGGAAGCACCAAGGGTCTTTGGGAG
CTACATGCCTAAAATTTATGTGAATTTGACATTGATGTCCACATCCTCCC
CAGGAATCTGTTCTTGGACTCCTGGACCGCCTGAGTCTTCTGCACCTTTT
CTGTCTTTCCCTTGGTATCCTCCATGCT
TTTTTTTTTTTCTTTTTTTTTTTTTCTTTGTTGGGGGGGGNNNNNNNNAA
AATAACNNNNGGTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATGTTCTCC
TTTCTAGCCATCCCTTCCACGAATGTGAATTTGCCCGTATATGCTGGTTT
TATGTGTCAACTTGACACAGGCTGGGGTTATCACAGAGAAAGGAGCTTCA
GTTGGGGAAGTGCCTCCATGAGATCCAGTTGCAAGGCATTTTCTCAATTA
GTGATCCAGGGGGAAAGGCAGGCCCCTTGTGGGTGGGACCATTTCTGGCC
TGGTGGTCTTGAGTTCTATAAGAGAACAGGCTGATCAAGCCAGGAGAAGC
AAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTCC
TGACCTGCTTGAGTTCCAGTCCTGACCCCCCCGATGATGAAAAGCAGTAT
GGAAGTGTAAGCTGAATAAACCCTTTCCTCCCCAACTTGATTCTTGGTTA
TGATGTTTGTGCAGGAATATAAATCCTGACCAATACACCGTTACACTGTA
AGGTTCTTTCCCTTTGTGTTTATCACTTCTTAAATGTGGAGTCCCTACCT
CCCAGGACTTTTTCCTAGTTAGAATATTCCTTCAAAGTTTATGGGAAACA
CTTTCTTGATTTATCCCACCATGATTTAAGTGCAACTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_p18.b1 MSMg01no092_p18.b1 CHROMAT_FILE:
MSMg01no092_p18.b1 PHD_FILE: MSMg01no092_p18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:01 2005
         (290 letters)



>mm_chr9_47869465_47870154
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagcgtagagatggggacatgaaggtgaactcaggtgtttaagatggtgaaatgtggcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagcgtagagatggggacatgaaggtgaactcaggtgtttaagatggtgaaatgtggcag 260

                                                                       
Query: 61  actagggtgtcactgtagatctttctgatattaaaacctctcaccactattttgtggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actagggtgtcactgtagatctttctgatattaaaacctctcaccactattttgtggttc 320

                                                                       
Query: 121 atccttgctatgtagctatgccccttcaagaccataaaaatcttaggttgtatgctaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atccttgctatgtagctatgccccttcaagaccataaaaatcttaggttgtatgctaaat 380

                                                                       
Query: 181 ttgggagatcatggcttatacattgaagcaggcctggaaaagtcatgaattggaatgacg 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgggagatcatggcttagacattgaagcaggcctggaaaagtcatgaattggaatgacg 440

                                                             
Query: 241 gacatgaaccagacactggaatagtacactttgtctgctaatgccacggg 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gacatgaaccagacactggaatagtacactttgtctgctaatgccacggg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)