BAC Information

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BAC

Clone NameMSMg01-095D13
Chromosome9 (Build37)
Map Location 80,764,525 - 80,765,059
singlet/doubletsinglet
Overlap genenone
Upstream geneFilip1, LOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392, 4930486G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095D13.T7 (MSMg01no095_d13.b1)MSMg01-095D13.TJ (MSMg01no095_d13.g1)
ACCAG312187AG312188
length688689
length of high quality
(start - end)
536 (55 - 590)290 (56 - 345)
definitionCHROMAT_FILE: MSMg01no095_d13.b1 PHD_FILE: MSMg01no095_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:10 2005CHROMAT_FILE: MSMg01no095_d13.g1 PHD_FILE: MSMg01no095_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCCTATTCGGAGAGATCCGCGGAATTCCCAATTAT
CCAAGGAAGATGCATTTACAATCAAATAAAAAAATTCACATGGGGATGCT
TTGTTATAGTTTATTTTCTTTTATCAAACATAATTGCCGTGAGCGATGTT
TGCAATAATAGCAATATCAAATTCAGAATAGATATGTAGTGTTGATTGAA
TAGCTTAGATAAATGATAAAATTATAAACCACAATGTTTTGTTTCCTTTG
GTTGATATCTAACAAAGAGTTGCCTGTGAAAATATAATCACTGATTTGGA
GTTAGTCTACAAAAATCATTGTCAAACTTTCTCAAATACACCACATAAAT
TTGTAGCCCCATTACTTTCATTACAGAATCAACCAAACCAAAAGTTAACA
AGTGGATTGAGTCTTCCAGATTCCGTAAACTTTCTAGTTAATACAAATGA
GGAGTAATGTTATATAATGCAGTTATCTATTCTCTGTATAGTACATTTTA
AATCAAACTGCTAGATGCAATTTGGAATATATTATAATGATAATTGCTTA
TTATATTTATTATCCTCATAGCCTTATGAATTGTTTTGTATAGGGAACGC
TCTATGCATAAATAAATATACACCCAAATCTTCAGAGTTATACCTTTCAA
CATCAGTAAGAAGTCATAACCCTAGCTCCTAATGTACT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATGT
TCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGATCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCTTGTGCA
CCCACCCACCACATGCTCCAACTGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAACCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGCGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGTAGGGCATCATCCTGAGTGAGGTAACTCCCTCACAAAG
GAACTTCCACCAATATGCACTCACTGATTAGTGGATATTAACCTATAACC
TACGATACCCCATATATTTGATACCATTTCCTTAAACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_d13.b1 MSMg01no095_d13.b1 CHROMAT_FILE:
MSMg01no095_d13.b1 PHD_FILE: MSMg01no095_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:10 2005
         (536 letters)



>mm_chr9_80764325_80765259
          Length = 935

 Score =  926 bits (479), Expect = 0.0
 Identities = 522/537 (97%), Gaps = 3/537 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaagatgcatttacaatcaaataaaaaaattcacatggggatgctttgttatagtttat 60
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 735 ggaagatgcatttacaatcaaat--aaaaattcacatggggatgctttgttatagtttat 678

                                                                       
Query: 61  tttcttttatc-aaacataattgccgtgagcgatgtttgcaataatagcaatatcaaatt 119
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tttcttttatcaaaacataattgccgtgagcgatgtttgcaataatagcaatatcaaatt 618

                                                                       
Query: 120 cagaatagatatgtagtgttgattgaatagcttagataaatgataaaattataaaccaca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 cagaatagatatgtagtgttgattgaatagcttagataaatgataaaattataaaccaca 558

                                                                       
Query: 180 atgttttgtttcctttggttgatatctaacaaagagttgcctgtgaaaatataatcactg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 557 atgttttgtttcctttggttgatatctaacaaagagttgcctgtgaaaatacaatcacta 498

                                                                       
Query: 240 atttggagttagtctacaaaaatcattgtcaaactttctcaaatacaccacataaatttg 299
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 497 atttggagttagtctacaaaaatcattgttgaactttctcaaatacaccacataaatttg 438

                                                                       
Query: 300 tagccccattactttcattacagaatcaaccaaaccaaaagttaacaagtggattgagtc 359
           ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 437 taggcccattaatttcattacagaatcaaccaaaccaaaagttaacaagtggatcgagtc 378

                                                                       
Query: 360 ttccagattccgtaaactttctagttaatacaaatgaggagtaatgttatataatgcagt 419
           ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 377 ttccaaattccgtaaacttcctagttaatacaaatcaggagtaatgttatataatgcagt 318

                                                                       
Query: 420 tatctattctctgtatagtacattttaaatcaaactgctagatgcaatttggaatatatt 479
           ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 317 tatctattctctgtaaagtacattttaactcaaactgctagatgcaatttggaatatatt 258

                                                                    
Query: 480 ataatgataattgcttattatatttattatcctcatagccttatgaattgttttgta 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ataatgataattgcttattatatttattatcctcatagccttatgaattgttttgta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 935
Length adjustment: 10
Effective length of query: 526
Effective length of database: 925
Effective search space:   486550
Effective search space used:   486550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)