BAC Information

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BAC

Clone NameMSMg01-095O17
Chromosome9 (Build37)
Map Location 21,772,443 - 21,772,730
singlet/doubletsinglet
Overlap genenone
Upstream geneEdg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor
Downstream geneRgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik, Zfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095O17.T7 (MSMg01no095_o17.b1)MSMg01-095O17.TJ (MSMg01no095_o17.g1)
ACCAG312720AG312721
length718715
length of high quality
(start - end)
296 (67 - 362)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no095_o17.b1 PHD_FILE: MSMg01no095_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:05 2005CHROMAT_FILE: MSMg01no095_o17.g1 PHD_FILE: MSMg01no095_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGGGCCAATCTCGGCTCTAGGAGACCCTGCCTCAAGTGCTTGCCTAG
GACCCAGCCCACAGGGCAGTGCTATCCCTAGGCAGGTGGTCCTGAGTTAT
ATAAGAAAATTGAGCAAGCCTCAGAAGCAATGCTACCGGTAAGTAATGTT
TCTCCATGGTCTCTGCTTCAGTCCCTGCCTCCGGGTTCCTGCTGGAACTC
CTTGCCTGACTCCTGCCCTGTACATACTGTGATATGGAAATGCAAGTCAA
ATGACCCCTTCCTCGTGTTAATTACTTCGGTCAGTGTTTTATTACATCAG
AATGCAAGCTAGATTTTCCAGTGACAGACTGTCTCAAAAAGTAAGAGGGC
CACATGTGGAGGCGCACACCTTTGACCCCAGCTCTTGGGAAGCAGATGCA
GGTGGATCTCTGTTTTTGAGGCCAGCTTGGGGTCCACATAGCAAGTCCTA
CGACAGCCAGGGCTACAAAGAGAAACCCTGTCTCAAAACAAAACAAATAA
AAACAAATGGACGTGGATGGCTCCTGAGGAGTGACAGTGGCTGAGACTTC
TGACCTTGATGCACACACATCCACAGACGCAGACACTCAACATAAATAGT
GAACAGGGCTGGAGATGTAACTAAGGCAGCGTTGTTGCCTAGACTCATTC
CCCAATACTGGAGGAGGA
CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCTTCCTCCTCACAGTTCTCACACCC
ACCTTGAAGGCATGTTCTCTGCCCTCGGATATGAAGCTTCTCTGCCAGTT
CCATGGATGGGGGTAGAACCTGGTCCTGGCCAATCAGCTGGAAGTCTGGT
TCAGGCATGACCATGGCCACCCATGGAGCCTGCTCTGGGATGTCAGCAAA
TAGGGGCCAGGGCACTGTATCCTGCAGTGTATGGAGCCTGTATGGCTGCC
CCTGCTACCCTGAGGGGAGTGAACCTTTGAAGCCTGCAGAAGGTAGGTGT
GCTTGTAGCCCCATATGAGAGACACACCACCGGGGAACCCCACCACACAC
AGCAGGTTTGGGGCCACCTTGGCCTGAATGAGATTTTGACTAAAAAACAA
CAACAAAAGCAAACAAATGGGAAACAGTAGCTGAGGAGAAGGCTCAGGAG
ATAAAGTGCTTGCTGTGCAAGAAAGAGGACCAGAGTTTAAATCCTAGCAC
TCTTGGAAAAGGCAGGATGAAGAGTCTCTGCATGAAACCTCACTGCCTCG
AGATGGACACAGGCGCCCTTGAAGTTCACTGGCTATTCAGCCCATCTGAT
CGTGAGTGCCAGTCCTCACGAGAAACCTTAGCCGCCCCCATATTTATGTG
TATCTTCCCCCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_o17.g1 MSMg01no095_o17.g1 CHROMAT_FILE:
MSMg01no095_o17.g1 PHD_FILE: MSMg01no095_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:05 2005
         (288 letters)



>mm_chr9_21772243_21772930
          Length = 688

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcttcctcctcacagttctcacacccaccttgaaggcatgttctctgccctcggatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 tctcttcctcctcacagttctcacacccaccttgaaggcatgttctctgccctgggatat 260

                                                                       
Query: 61  gaagcttctctgccagttccatggatgggggtagaacctggtcctggccaatcagctgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaagcttctctgccagttccatggatgggggtagaacctggtcctggccaatcagctgga 320

                                                                       
Query: 121 agtctggttcaggcatgaccatggccacccatggagcctgctctgggatgtcagcaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtctggttcaggcatgaccatggccacccatggagcctgctctgggatgtcagcaaata 380

                                                                       
Query: 181 ggggccagggcactgtatcctgcagtgtatggagcctgtatggctgcccctgctaccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggccagggcactgtatcctgcagtgtatggagcctgtatggctgcccctgctaccctg 440

                                                           
Query: 241 aggggagtgaacctttgaagcctgcagaaggtaggtgtgcttgtagcc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggggagtgaacctttgaagcctgcagaaggtaggtgtgcttgtagcc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)