BAC Information

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BAC

Clone NameMSMg01-096G18
Chromosome9 (Build37)
Map Location 59,181,108 - 59,181,550
singlet/doubletsinglet
Overlap geneBbs4
Upstream geneTbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk
Downstream geneArih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096G18.T7 (MSMg01no096_g18.b1)MSMg01-096G18.TJ (MSMg01no096_g18.g1)
ACCAG313102AG313103
length782784
length of high quality
(start - end)
466 (98 - 563)57 (237 - 293)
definitionCHROMAT_FILE: MSMg01no096_g18.b1 PHD_FILE: MSMg01no096_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:46 2005CHROMAT_FILE: MSMg01no096_g18.g1 PHD_FILE: MSMg01no096_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNCNCNCNCCCNCCC
NCCCTCTATAATTGCGGCGCTATACGACTCCTATAGGTACAGAACCGCGG
AATTCACAAAGCTATTTCGCCTATGCTTAGGTTGTGAAAGCTACTTTCTT
AGACATGATATTCCCACATAAGTACACCAAAGCTCTGTATTCACATTCTC
CATTGTCCTACAGTGGTACTGATCTGGTTATCTTCATTCCATTAAACTGT
AATTAGGCACAAGACCAACTGCACAGTGCCCTCCAGCTTAACAAGCATGA
CCTGACTTACATAATGTTGGGGAAGATCCATTTACTGCAGGGAGACCTGG
ATAAAGCCATCGAGATCTACAAGAAAGCAGTAGAGTAAGTGTCTTTTTCT
CTTAGACATCAACCAGCATGTCCACCCTTTTAACACTGCATCATGAAGTT
ATCACCTACAAAGTTTATGCTCCAGAACAGAACAATTGAATAACAAAACC
TTGTGCACACGTATGCACGCACGCTCACATACACGCAATGATGCTTGCCA
TTTTGTGTTGGGACAGATTGACAGCTATGCTGGAATGTATGCAGTCCACA
GGCCACAGGTTGACATACCTGCTGGAAGCAATGAGACAGTTACCTGATTT
ACAGATAGTTCCTTCCTTCTGTAATAGTGTCTGCCCTATAATAGGTGCTT
CTCAGGCCAAGCACTGGGGAATTAGTTCCCTTCACGTGTGTTTTTTTCAC
CTTTCAGCTGAACATCTTGTTCTCAGCCCTAT
TTTTTTTCCNCCGCTGGTNCGCCCGGTGTGGGCGNCCTTNTCCCNCCACC
AAAAANCAACGATGATATGGGTAGGCCCGGNGGNCGNCTGGCCTTTCGGC
ACNCGANANNNANNGANGGANTTGGCAAAACGAAGGGANNNNNGNNNNGG
NNGGGNNAANNNNGNNNNNGAAGNNAANGGGCCACCAAAAGANGAAAGNA
GGAGGGGAGAANNAAGGGAGGGANANCAGGAGAANAGGAAAAAAAAGAGA
GAGAGGAGANAAAGAGAGGAGGNAGNCAGGAGAAGAGAGAGACGGNGAGC
ACAGGGCNAGGAGAAACATATCAAGGGACACAGGGCCGAAACACACGGGA
GAGGAACGCAAAACCGGCCCAANCNAGGCAAATTTTTTTTTTTTCAACAC
CAGGACAGCGCGACNCACACACAGGCAGGACCCCCCACACACGCCANACA
AGAGAAGGGCCACACAAGCAAACCAGAGCCCACCGACANAGCAGAAGAAA
GCAGCCAGCGGACACAGGGACGCCCCAGACGCCACCAGCGGCCGGACGGA
GAAAAGGGGAAGCAGGCCAACCAACCCACGGGGAACCGGGGAAACGAAAA
GCACCCAAAACACGGAGAAACCCGCACAGCCACCAAAAAAAAGGAAAACG
GACCGCCAGCCGAAAAAAGCAGCGGACAAGGAGGCCAACGGCAGAAAAAG
CCCCACAGAAAAGACCCGCCGCAGGATATTTTTTTGAAAGGGCCTCAAGC
TAGAGCTTGTATAAGGTCAGGTAACAGGTTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_g18.b1 MSMg01no096_g18.b1 CHROMAT_FILE:
MSMg01no096_g18.b1 PHD_FILE: MSMg01no096_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:46 2005
         (466 letters)



>mm_chr9_59181033_59181898
          Length = 866

 Score =  810 bits (419), Expect = 0.0
 Identities = 437/443 (98%)
 Strand = Plus / Minus

                                                                       
Query: 24  ctatgcttaggttgtgaaagctactttcttagacatgatattcccacataagtacaccaa 83
           ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
Sbjct: 518 ctatgcttaggttgtgaaagctactttctcagacatgatgttcccacataagtacaccca 459

                                                                       
Query: 84  agctctgtattcacattctccattgtcctacagtggtactgatctggttatcttcattcc 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 agctctgtattcacattctccattgtcctacagtggtactgatctggttatcttcattcc 399

                                                                       
Query: 144 attaaactgtaattaggcacaagaccaactgcacagtgccctccagcttaacaagcatga 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 attaaactgtaattaggcacaagaccaactgcacagtgccctccagcttaacaagcatga 339

                                                                       
Query: 204 cctgacttacataatgttggggaagatccatttactgcagggagacctggataaagccat 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 cctgacttacataatgttggggaagatccatttactgcagggagacctggataaagccat 279

                                                                       
Query: 264 cgagatctacaagaaagcagtagagtaagtgtctttttctcttagacatcaaccagcatg 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cgagatctacaagaaagcagtagagtaagtgtctttttctcttagacatcaaccagcatg 219

                                                                       
Query: 324 tccacccttttaacactgcatcatgaagttatcacctacaaagtttatgctccagaacag 383
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 218 tccacccttttaacactgcagcatgaagttatcacctacaaagtttatgctcaagaacag 159

                                                                       
Query: 384 aacaattgaataacaaaaccttgtgcacacgtatgcacgcacgctcacatacacgcaatg 443
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 158 aacaattgaataacaaaaccttgtgcacacgtatgcacgcacgctcacatgcacgcaatg 99

                                  
Query: 444 atgcttgccattttgtgttggga 466
           |||||||||||||||||||||||
Sbjct: 98  atgcttgccattttgtgttggga 76


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)