BAC Information

Click to search

BAC

Clone NameMSMg01-096I10
Chromosome9 (Build37)
Map Location 107,867,746 - 107,867,938
singlet/doubletsinglet
Overlap geneTraip
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv
Downstream geneUbe1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096I10.T7 (MSMg01no096_i10.b1)MSMg01-096I10.TJ (MSMg01no096_i10.g1)
ACCAG313182AG313183
length735731
length of high quality
(start - end)		137 (50 - 186)193 (69 - 261)
definitionCHROMAT_FILE: MSMg01no096_i10.b1 PHD_FILE: MSMg01no096_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:54 2005CHROMAT_FILE: MSMg01no096_i10.g1 PHD_FILE: MSMg01no096_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:52:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATCGGCGGAATC
AACTTATGTCTCAAAAAAAGCTATTGCCATTGGAATCACACTACCCCTGT
ACCCCTACATACTTAGAGCTGGGGGCCTTTAACCCGGGGTCTTTGGCATG
CTAGGTAAGTGCTCTACCACTGAGCTTCATGCTCAGTTGATACGGTGTGT
GTGTGTGTGTGTGTGTGTGTAAGCATGAATATTACAGCACATATGTCGTA
AGTCAGATAACAACATTCAATAGCCAGTTCTCTTCTTCTCTCATGCGGGT
CTGGACATGTAATTCATTTCTGTAATGTCTGGCGCACCTGAGTCTTCACC
CACTGAACCATGTTACCAACTCCACGTAATACAGGTTATACCCCCTCTTG
TTGTTTCACGGCTCCTCCCCTCCCCTGTTTCTCTAGATTCTCTTTCTCTG
TTTTTTCCTGATTGTCTCGTCTCCCCCCTCTTTACACCCACTTGCTCTCC
CATCCATATCTCCCTTTGCCATTGTCCCCTCATCGTCGTCATCTCATCTC
TCCTCCCTCTTTAACTCTCTCTTTTATTTTCTTATTATTAACACTTTCCT
ATTTCCTACATCTCATACATATCCTAAACCCCTACTTAAATTATTCCACT
ATTCTGCTCTCTCTCTCATTTCTTTTCCCCTTTCTTCTCCCTTCATCTCG
GTTCTTTCCCTCCTTTCCTTTCTTGTGCCCCCCCT

TGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGAATCGAGTATGCCAAGTTTAAAAGGCTAATGC
TAAACGCAGCAGTCCTATCCCTGGGGTTTCGCGCCTAGAAAGATACTGGT
GAAGACAGGGAACCTGTCCTCAACTTGAAGGGCAGCCCAGCAGGCTTAGG
ACTGACGTTTGGCTAATGCAGTGCCCTCCTGATTTGAGAGACCAGAACTA
TCCTCTTAGTGCCAAAGTAAGGTGTGGCCCTGGCATGAGGCTTATTGACC
AGACAGAGGGCTCATTCCCACCTGGGCTTTCCAGACCGGATTCTTCTATA
ATATGGGGCTGCCTAGTGGACTCCGGGCCTAATCATCCTACCCACAAAAA
CAAGGTTGCACTGCCCAGCCAATACCTAGTACAGGAACATGGCCCACATC
AGCCTGTTTAGCAACGTACATCACCCCACGCGCTTTTGTCCAGTCCCTGG
TCCCCTACGTAACCCATGCGCTTGCGTTTCCCTTGCTATAACAGCCCGTC
TCTTAGTATCCCCTGTTTTCACTCTGTCCTACCCTCCCTTAACGTACGTT
AGAGCTATCCCCCTCTAGCACCCGTGCTTTTCCCCGACAACGCTTTCCCT
ATCTTCTCTCCGATGGCACCTTAGGCCACTGCTCTCTCCTAATTACCCTG
TTTCCCTATATTGCTTTCTTCCTTCACTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_i10.g1 MSMg01no096_i10.g1 CHROMAT_FILE:
MSMg01no096_i10.g1 PHD_FILE: MSMg01no096_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:52:54 2005
         (193 letters)



>mm_chr9_107867546_107868138
          Length = 593

 Score =  358 bits (185), Expect = e-103
 Identities = 191/193 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatcgagtatgccaagtttaaaaggctaatgctaaacgcagcagtcctatccctggggtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aatcgagtatgccaagtttaaaaggctaatgctaaacgcagcagtcctatccctggggtt 334

                                                                       
Query: 61  tcgcgcctagaaagatactggtgaagacagggaacctgtcctcaacttgaagggcagccc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 333 tcgcgcctagaaagatactggtgaagacagggaacctgtccacaacttgaagggcagccc 274

                                                                       
Query: 121 agcaggcttaggactgacgtttggctaatgcagtgccctcctgatttgagagaccagaac 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 agcaggcttaggactgaggtttggctaatgcagtgccctcctgatttgagagaccagaac 214

                        
Query: 181 tatcctcttagtg 193
           |||||||||||||
Sbjct: 213 tatcctcttagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 593
Length adjustment: 8
Effective length of query: 185
Effective length of database: 585
Effective search space:   108225
Effective search space used:   108225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |