BAC Information

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BAC

Clone NameMSMg01-096L08
Chromosome9 (Build37)
Map Location 57,397,909 - 57,398,068
singlet/doubletsinglet
Overlap geneMpi1
Upstream geneLingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik
Downstream geneScamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-096L08.T7 (MSMg01no096_l08.b1)MSMg01-096L08.TJ (MSMg01no096_l08.g1)
ACCAG313322AG313323
length777784
length of high quality
(start - end)
339 (145 - 483)164 (131 - 294)
definitionCHROMAT_FILE: MSMg01no096_l08.b1 PHD_FILE: MSMg01no096_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:09 2005CHROMAT_FILE: MSMg01no096_l08.g1 PHD_FILE: MSMg01no096_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:53:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTNNTTNTTNNNNTNNNNTTTTCTTCTCTNNCCCTTCCCTTC
CCCTTCTTAANNTGTATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
CCAGAGAAGCGCGGAATTCTTGCAGTATACCTGTAGAAGGCTAATAACTA
AAATACAACCCATGTTTGGATCCAAATGATTTACATTTGCATCTTGTAAT
TTATTTTCTACCAGAGCCAATTCTCTCTCAGCCTCAGCTAATAATTTTCT
TGGACTGTTAAGTCTTTATCACCTTGTAAAGTTTGAAATAAATTACTTAG
CTCTTGAGTAGCTAATCTAATTATGGGTCTTAGCCAATTAATGTCTTCCA
ACAATTTTTGAAAATCATTAAGAGTTCTTATTTGGTTTCTCATGATTTGT
ACTTTCTGTGGTCAAATTTTCTGTAGATTTATCTTATATCCTAGATAATT
AAAAGAATCTCCTCTTTGTATTTTTTTTTCCAGGAACAATTTGTAATCCC
CCAACAAAGCAAAATTCTCTTCACCACACATTTTGCTAAGGTAGCGCCAT
TTGAATATCATCCATATCAAAAAATCATCCATATTATGTCAAACAATTAA
TTGAGGAACTTTTTTATTACCTATTTCTAACATGTATTTGCCACCAGATT
GCCATATCGTATTGACTGTTCAAAATTCCTTGCAGGAGCCCTTTTCTAAC
GAAAACCTTTTCGTTGGCTATGCACTGCTATATATGTGGGTCCTGACATA
TCCATAACCCTTCTCCCAACTCGGCCC
TTTTTTTTTTTTTTTTTTTTTTTCTNNCCTCTCTTCCTCCCCTCTCTTCT
CCCCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGGGCAGGCACCCC
AGCTGCTGCCTCAGCTGCACCCCACCGTGGAAACTTCTCACAGCCTGGCT
TATACAGTCTGACTAAACTCTTTTTAAAATACTTATTTTTATTTTATGTA
TATGAGTGTTTTGCCTGCATGTGTAGGCCTGTGCACTCTACGAGTAGAGT
GTTTGGCAAGGCCAGAAGAGGGCTTTGAGTTCCTTCAGATTGGAGATACA
GACAGTCATGATCTGCTGAGTGGATGCAAGCTGAACCCAGGTCCTCTGCA
ATAGCAATCGGTGCTCTTAACCACAGAGCTATAGCTCCAGGATCTTTTTT
TTTTCTCCAGACAGGGTTTCTCGCCACAGCCCTCGCTTGTCTTGCATTCC
ACTTAGTAGATCTAGGCTGTCCCCCGAACTCACACATCTGTTTGCCTCCC
AAGACTTGCCATCAAAGGTGTCGCTACATAATGCTCCGACTTCTAGTACC
CTTCTTCAATTATTACTCCACTTCTACGCTGTTTGCCCCCCACCGCTTGA
ACGCCACATCTACTGCCTAGCTCGTCCGCCTCTCTTCACAACGAATTAGC
TTTACTAACCCATCTTTTATTTGTATCTACCTCTCTGTCTGTCAATCCTA
TACCGCCGCCTGTCTGGCTACACTAACTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no096_l08.g1 MSMg01no096_l08.g1 CHROMAT_FILE:
MSMg01no096_l08.g1 PHD_FILE: MSMg01no096_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:53:10 2005
         (164 letters)



>mm_chr9_57397767_57398330
          Length = 564

 Score =  310 bits (160), Expect = 4e-89
 Identities = 160/160 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagggcaggcaccccagctgctgcctcagctgcaccccaccgtggaaacttctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 caggacagggcaggcaccccagctgctgcctcagctgcaccccaccgtggaaacttctca 243

                                                                       
Query: 61  cagcctggcttatacagtctgactaaactctttttaaaatacttatttttattttatgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cagcctggcttatacagtctgactaaactctttttaaaatacttatttttattttatgta 183

                                                   
Query: 121 tatgagtgttttgcctgcatgtgtaggcctgtgcactcta 160
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tatgagtgttttgcctgcatgtgtaggcctgtgcactcta 143


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 564
Length adjustment: 8
Effective length of query: 156
Effective length of database: 556
Effective search space:    86736
Effective search space used:    86736
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)