BAC Information

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BAC

Clone NameMSMg01-097O07
Chromosome9 (Build37)
Map Location 49,823,627 - 49,823,914
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
Downstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-097O07.T7 (MSMg01no097_o07.b1)MSMg01-097O07.TJ (MSMg01no097_o07.g1)
ACCAG314210AG314211
length740677
length of high quality
(start - end)
---289 (56 - 344)
definitionCHROMAT_FILE: MSMg01no097_o07.b1 PHD_FILE: MSMg01no097_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:48 2005CHROMAT_FILE: MSMg01no097_o07.g1 PHD_FILE: MSMg01no097_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:54:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCCAAAAAACAACAAACACCCAANAACCCCGGCNCCNNNNNGCTCCAAC
NCCCCCCTCAATTCTGGGCGCCAAACGAATCCCATTTCACACCACCGNGG
NAATTAGGACTTGCACACCCACTCAGAAACNTGTCTCAAAAAGAAAAAAT
ATATATATATATATAGCTCAACCACTCTGTAGAAAAAAAAAGGCTAATGA
GCAAACTTAAAATTATGGAGTTCTCATTTTGCCACAAGTTAGAAATGAAA
CACAGACGAGAAGATGGAGATTGGGAGACCACATGAATACAATTCTGTGT
TGTAGCTGACCCAGGCAATCCATGTTGGGAAAGCTGTATTACAAAGAAGA
CTGAGCACTAACCTGGTCTTTTTTTCGAAAAGTAAACCCGGCCCACCGAA
GCACGAATTTTTGATTAAACCCCCCCCCCCGGGAGTCTTTTGAAGGTATG
GGGTTGAGAGGCCCTCCAAGCCTAAATCCCAAAAAGACGCGGGGGGGGGG
GGGGGACTCCCCCACCCTCAAACCCCTCCTTCCCCCCCCCCCCGCCCATT
TTATCCCCTCGCCCCCCCCCTAAACAACCCAATGCGGCCGGCTACCCCCC
CCCTCCCCCCCCCTTGTCCCCCCCAAAAAACCCACTGTCCCTCCAAAACC
CCCCCCCCACCCCCCCCCGCCCATTTTTCCCTCCTCTCCCTCCTCTCGCC
ACCCCCCCTCTCGCCCAATCAACCCACCCTCTCCCCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAA
ATTCCTCAGATTTGCTAGGAACTGACAGGACAGTTGGGCTACGTGTGAGA
TCAGCTAGACTATAGAAAAAGTCCATAGTTCTCCAGGTAGGTCAGAAGCA
TTAGTTGTAGAAAGCTGCATTAAGTCACTGCTCCCAAGCCTGCAACCTTT
CACCCTGGGCTCAATTCTGCATGTGGCACTGTAGAGAAGAAGGGAGCTAG
AGAAGGGGCCAGAACCATGCCCCTTGCCAGCTGCCTAACCAAGATTATGG
TTATTTAATAAATCCAAGGCCAGGCGTATTTATGAGGCTCTCATAAGCTG
CCGCAACAATATCATTTAGAAAACATTTATGCTCCCAAGATGAAGGCAAT
CCCTCCCCCTCCTTTATTTATAAGGCATGCTGGGTAATTAAGTGCGCGCT
GGGAAGGAAGGTGGTTGGGAGAAGATGGCCTCTAAATAATCCTGCCTGGT
AAAGCCACCATCTGTTGTTGTGCAGTGGGGATAGCCCACATAAGGCAGCA
TGGTTTATAAGCAGTGCAAGAATCAAGGGTACAGGAGAAATTTCCCAAGG
AATAACCAGCGGCCTGGCACAGATGTTGACTGAGCGACTGGATGATGTGG
AGGTGTCCTGCTCCTGGAACCCAGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no097_o07.g1 MSMg01no097_o07.g1 CHROMAT_FILE:
MSMg01no097_o07.g1 PHD_FILE: MSMg01no097_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:54:48 2005
         (289 letters)



>mm_chr9_49823427_49824115
          Length = 689

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagatttgctaggaactgacaggacagttgggctacgtgtgagatcagctagactatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcagatttgctaggaactgacaggacagttgggctacgtgtgagatcagctagactatag 429

                                                                       
Query: 61  aaaaagtccatagttctccaggtaggtcagaagcattagttgtagaaagctgcattaagt 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 428 aaaaagtccatagttctccaagtaggtcagaagcattagttgtagaaagctgcattaagt 369

                                                                       
Query: 121 cactgctcccaagcctgcaacctttcaccctgggctcaattctgcatgtggcactgtaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cactgctcccaagcctgcaacctttcaccctgggctcaattctgcatgtggcactgtaga 309

                                                                       
Query: 181 gaagaagggagctagagaaggggccagaaccatgccccttgccagctgcctaaccaagat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gaagaagggagctagagaaggggccagaaccatgccccttgccagctgcctaaccaagat 249

                                                           
Query: 241 tatggttatttaataaatccaaggccaggcgtatttatgaggctctca 288
           ||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tatggttacataataaatccaaggccaggcgtatttatgaggctctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)