BAC Information

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BAC

Clone NameMSMg01-098C10
Chromosome9 (Build37)
Map Location 103,774,392 - 103,774,849
singlet/doubletsinglet
Overlap genenone
Upstream geneRyk, Slco2a1, Rab6b, Srprb, Trf, 1300017J02Rik, Topbp1, Cdv3, Bfsp2, Tmem108, 4932413F04Rik
Downstream geneEG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921, Cpne4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098C10.T7 (MSMg01no098_c10.b1)MSMg01-098C10.TJ (MSMg01no098_c10.g1)
ACCAG314404AG314405
length678684
length of high quality
(start - end)
458 (43 - 500)280 (55 - 334)
definitionCHROMAT_FILE: MSMg01no098_c10.b1 PHD_FILE: MSMg01no098_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:10 2005CHROMAT_FILE: MSMg01no098_c10.g1 PHD_FILE: MSMg01no098_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACTATCCGAAGAGGATCCGCGGAATTCCAGGATTACACTCCAACTGAA
CGACCTTGTACTCTTCCTCTGCCGTAACACCCCCACCCCACACTCTGAGT
TGTAATTTCTAAGTCTGGTCATGGGTCCTGTTGCTTCTAGGAATGTTCTC
ATGCCTCTCCTTGGTCACAATGCTCTTCCCCTCCAAATGTTTGTTCTCTT
GCCTGGCAAATGCCCACATGCTGCTACTTGAATTCAGTGATGACTTTACA
CTCCTGAAACCTTATCATGTACCCTCAAGTTTTCCCCACAATGCCCCATT
CTCTGTGTAGCAGCATTTACACCCATCCCCTGACTAAGCCCACTGACTGA
GTTTACTTTGGCTCTAGTTCTCCTGCTGTGCTTCTAAACCCTGGGAACAC
ATTCCAAGCCTTTTACTTTTCCCTATAACCCCCAGGGCGCAGCTCATCAC
TTTCAATACTTAGTGATTCATTACTTTGAATTACTAACAAACAGCCTCCA
GATATTAAGAAGTACAACATTGTGCACAGCGTTCTTGGTTTCTATGTATG
GTGCCTCTAAGCCTCTGGTCAGGAAAGTTTCCTTGTTACGAAAGCATACG
GTTGTGACTAATTTATTCAACTGTGTTTTTATATTGACTATCATAATGTT
ACCAAAATCTCACCCTTCTGCATATGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCTTAAGAAGAAGCTATAGTTTAAGTGTAATGCCCTCTACTGCC
TCAGGTATTTGAATGCTTGGTCCTCAGATAGTGTTACTGTTGGGGAAGCT
TAAGGTGTGTAGCCTTGTTAGAGGAAACATATCATTGGAGGCGGGCTCTG
AGAGTTTAAAGACTCCTGCTGCTTGAAGTTCCTTCTCTCTGCTTTGTGGT
TGTGGCTCAAGGTGTGAGTCCAGCCTCCTGCTCCTGCTGCCATATCTTCT
CTCCACCATCATGGACTCTGACCCTCTGAAACCATGATCCCAAACCAACG
CTTTTATAGGTTGCTTTGGTTGTAGGTTTCTCTGCAGCAATATAAAAAAA
AAAAAGCAGTCAGCGTGGAGGCCAACCTCAGAAGGTGCCCAGCCTGGGAC
TCTCACTACAGACAGAATGAGGCTGTTCATAACTCATGAGTGGGTCACAT
GGTATTTTCATCTCCTCCAAGAAAGTATTGTTCATCATGCCTGATATTTT
TTTTTATTATTTACCCCTCGCCTTTCACGATTCTCTAGATTATGTACCGC
ACATTCGAATATTTATATACTCTGGGTAAGAAAGCATTACGGACCCCTCA
TTTCCAACCAGCCTCTACAACCATTCCTTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_c10.b1 MSMg01no098_c10.b1 CHROMAT_FILE:
MSMg01no098_c10.b1 PHD_FILE: MSMg01no098_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:10 2005
         (458 letters)



>mm_chr9_103774192_103775049
          Length = 858

 Score =  862 bits (446), Expect = 0.0
 Identities = 455/458 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactgaacgaccttgtactcttcctctgccgtaacacccccaccccacactctgagttg 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactgcacgaccttgtactcttcctctgccgtaacacccccaccccacactctgagttg 260

                                                                       
Query: 61  taatttctaagtctggtcatgggtcctgttgcttctaggaatgttctcatgcctctcctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatttctaagtctggtcatgggtcctgttgcttctaggaatgttctcatgcctctcctt 320

                                                                       
Query: 121 ggtcacaatgctcttcccctccaaatgtttgttctcttgcctggcaaatgcccacatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtcacaatgctcttcccctccaaatgtttgttctcttgcctggcaaatgcccacatgct 380

                                                                       
Query: 181 gctacttgaattcagtgatgactttacactcctgaaaccttatcatgtaccctcaagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctacttgaattcagtgatgactttacactcctgaaaccttatcatgtaccctcaagttt 440

                                                                       
Query: 241 tccccacaatgccccattctctgtgtagcagcatttacacccatcccctgactaagccca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccccacaatgccccattctctgtgtagcagcatttacacccatcccctgactaagccca 500

                                                                       
Query: 301 ctgactgagtttactttggctctagttctcctgctgtgcttctaaaccctgggaacacat 360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgactgagtttactttggctctagttctcctgctgtgcttctaaaccctgggaacacat 560

                                                                       
Query: 361 tccaagccttttacttttccctataacccccagggcgcagctcatcactttcaatactta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccaagccttttacttttccctataacccccagggcgcagctcatcactttcaatactta 620

                                                 
Query: 421 gtgattcattactttgaattactaacaaacagcctcca 458
           ||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gtgattcattactttgaattactaagaaacagcctcca 658


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)