BAC Information

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BAC

Clone NameMSMg01-098I23
Chromosome9 (Build37)
Map Location 37,000,383 - 37,155,314
singlet/doubletdoublet
Overlap gene1810021J13Rik, Slc37a2, LOC100042561, Ccdc15
Upstream geneLOC100042485, EG639025, LOC671003, EG434396, A630095E13Rik, Acrv1, Chek1, Stt3a, Ei24, LOC627681, Fez1, Pknox2, LOC100042545
Downstream geneHepacam, Robo4, Robo3, BC024479, Esam1, Vsig2, Nrgn, Spa17, Siae, Tbrg1, Panx3, LOC666881, EG627798, Olfr160, Olfr151, Olfr874, Olfr875, Olfr876, Olfr877, Olfr145, EG627852, Olfr878, GA_x5J8B7W60AJ-1667802-1666911, Olfr880-ps1, Olfr881, Olfr882-ps1, Olfr883, Olfr884, Olfr1550-ps1, Olfr885, Olfr886-ps1, Olfr887, Olfr888, Olfr889, Olfr890, Olfr891, Olfr892-ps1, Olfr893, Olfr894, Olfr143, Olfr895, Olfr896-ps1, Olfr897-ps1, Olfr25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098I23.T7 (MSMg01no098_i23.b1)MSMg01-098I23.TJ (MSMg01no098_i23.g1)
ACCAG314708AG314709
length700782
length of high quality
(start - end)		371 (43 - 413)331 (124 - 454)
definitionCHROMAT_FILE: MSMg01no098_i23.b1 PHD_FILE: MSMg01no098_i23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:43 2005CHROMAT_FILE: MSMg01no098_i23.g1 PHD_FILE: MSMg01no098_i23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:55:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,154,944 - 37,155,314)(37,000,383 - 37,000,713)
sequence
CATTCCAAAGAGGATCCGCGGAATTCCAGCATATCTGAGTGTCAGTTGAC
CCGGTTACTGTGATCGCTGCCAGCCCTTTTTATTAGCCTTCTCTAAATTT
TTGGTACTTAAAGAAAGATGAACTGCTGGAGGATGCTGTTTCCATTCTGA
TACAGGTTATATTCTTGCGTCAAAATTATACAACAATGATGTGTTTTCCA
AAACTTGCTTCATCTTTGGTTGACACAATCAAATATTAACTTAGTTCTTA
CTACATACCAGCAAGTAGGCTAGTTTACTTCACAAACATGTTTGTTTGCT
GTGAATGGCATAGGTACTGTGTACAATTTCCCGACACTGTAACATAAGAA
GAATGACAGTTGGTCACTCTTCAAATGTTAAGTAGTTGCTCAGAGTTTAT
AAGTTTTTAAATGCAGATCCAGGCAAAATGAAAATAAGAAAATAAAAGAA
AGAGGTTAATCCTGATAGACTCTGAGGAAGTTGTAAATTCCATGGTGTCA
AGGAACTTCTTGTTTATTTTTGTTTTTGGCGTACACTACGTCCTTAGGAT
GTAGTTGTTGAACGAATGAGGAACTATGGTCATTGTCTGCGAAGGAATAT
AAATGCTGTACACTCATGGTACAAGCATTTCTTATGAATAAATGCCCTTT
CAAACTTTAAACATGCAAATATTTGATTCTCTTGCTAACAAAGAGAGCGT


NNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCNCCCCCTCAATTATTTAT
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGAAAAAGCAGTTGCCTGCAGAAAGTT
GCTAGTTGAACTGCAGGAAGTCAAACACGTTTGGAATGGTGATTTTTGCC
CTCTATACTTAGGAGATAATTGTGGTTATCACATTGGTGTCCAGAGCCAC
TCTGGATGTCTAGTGATAAATACCAAAATTCCTGCTAAACAACCCACAAG
GCTAGGTGTGGTGGCACATGCCTTTAATCTCAGCACTTGGGGAGCAGAGA
CAGGCAGATCTCTGTAAATTCAAGACCAGCCTGGTCTACAAAGTGAGTTC
CTGGCCAGCCAGGATTGTTATACAGAGACGCCCTGCCTCGGAAAACAAAA
ACAAAACAAAACAAACAAAAACCAAGAATGCATCACACAGAAGGCAGTCC
CCACAATAAAGTGACCTGTTTAAAATGCGAAGAGTGACAAGACTGAGAGT
GACAATGACTGCTTTGGGAGCAACTGCTGAAAAAGCCCCTAAGGAAGTCA
CCATTGGGGAAGAGGATGTGCCTCAGGCCTACCCAACTCCAATCCACAGC
CACAGTGACCTGTTTTCCTCCTAAGTTCTCTAATAAGCAGGGGGGTAGTC
CATTTTTATAGAATGCCCCCCTTTGAAGAGCTTTTGCAACCATTTGTCAT
TGGGCAATTCCCTTTCTAACATTCTTATTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_i23.b1 MSMg01no098_i23.b1 CHROMAT_FILE:
MSMg01no098_i23.b1 PHD_FILE: MSMg01no098_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:43 2005
         (371 letters)



>mm_chr9_37154744_37155514
          Length = 771

 Score =  710 bits (367), Expect = 0.0
 Identities = 370/371 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttgacccggttactgtgatcgctgccagccctttttattagccttctctaaattttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cagttgacccggttactgtgatcgctgccagccctttttattagccttctctaaattttt 512

                                                                       
Query: 61  ggtacttaaagaaagatgaactgctggaggatgctgtttccattctgatacaggttatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ggtacttaaagaaagatgaactgctggaggatgctgtttccattctgatacaggttatat 452

                                                                       
Query: 121 tcttgcgtcaaaattatacaacaatgatgtgttttccaaaacttgcttcatctttggttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tcttgcgtcaaaattatacaacaatgatgtgttttccaaaacttgcttcatctttggttg 392

                                                                       
Query: 181 acacaatcaaatattaacttagttcttactacataccagcaagtaggctagtttacttca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 acacaatcaaatattaacttagttcttactacataccagcaagtaggctagtttacttca 332

                                                                       
Query: 241 caaacatgtttgtttgctgtgaatggcataggtactgtgtacaatttcccgacactgtaa 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 caaacatggttgtttgctgtgaatggcataggtactgtgtacaatttcccgacactgtaa 272

                                                                       
Query: 301 cataagaagaatgacagttggtcactcttcaaatgttaagtagttgctcagagtttataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 cataagaagaatgacagttggtcactcttcaaatgttaagtagttgctcagagtttataa 212

                      
Query: 361 gtttttaaatg 371
           |||||||||||
Sbjct: 211 gtttttaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no098_i23.g1 MSMg01no098_i23.g1 CHROMAT_FILE:
MSMg01no098_i23.g1 PHD_FILE: MSMg01no098_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:55:43 2005
         (331 letters)



>mm_chr9_37000183_37000913
          Length = 731

 Score =  609 bits (315), Expect = e-179
 Identities = 327/331 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaaaaagcagttgcctgcagaaagttgctagttgaactgcaggaagtcaaacacgtttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaaaaagcagttgcctgcagaaagttgctagttgaactgcaggaagtcaaacacgtttg 260

                                                                       
Query: 61  gaatggtgatttttgccctctatacttaggagataattgtggttatcacattggtgtcca 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatggtgatttttgccttctatacttaggagataattgtggttatcacattggtgtcca 320

                                                                       
Query: 121 gagccactctggatgtctagtgataaataccaaaattcctgctaaacaacccacaaggct 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gagccactctggatgtctagtgataaataccaacattcctgctaaacaacccacaaggct 380

                                                                       
Query: 181 aggtgtggtggcacatgcctttaatctcagcacttggggagcagagacaggcagatctct 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 aggtgtggtggcacatgcctttaatctcagaacttggggagcagagacaggcagatctct 440

                                                                       
Query: 241 gtaaattcaagaccagcctggtctacaaagtgagttcctggccagccaggattgttatac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtaaattcaagaccagcctggtctacaaagtgagttcctggccagccaggattgttatac 500

                                          
Query: 301 agagacgccctgcctcggaaaacaaaaacaa 331
           |||||||||||||||| ||||||||||||||
Sbjct: 501 agagacgccctgcctcagaaaacaaaaacaa 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 731
Length adjustment: 9
Effective length of query: 322
Effective length of database: 722
Effective search space:   232484
Effective search space used:   232484
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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