BAC Information

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BAC

Clone NameMSMg01-098O12
Chromosome9 (Build37)
Map Location 88,315,907 - 88,316,409
singlet/doubletsinglet
Overlap geneSnx14
Upstream geneTbx18, LOC671731, LOC100039580, LOC384962, EG272633, Nt5e, LOC100039601
Downstream geneSyncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-098O12.T7 (MSMg01no098_o12.b1)MSMg01-098O12.TJ (MSMg01no098_o12.g1)
ACCAG314967AG314968
length678703
length of high quality
(start - end)
507 (34 - 540)280 (56 - 335)
definitionCHROMAT_FILE: MSMg01no098_o12.b1 PHD_FILE: MSMg01no098_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:09 2005CHROMAT_FILE: MSMg01no098_o12.g1 PHD_FILE: MSMg01no098_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCCGCGGAATTCTCTAGCATGCCCAATGGATGGGTTCAGTGACTCC
CACCAGAACAAGAAGGAGAAAATATAAGCATGGGAACCAAAACCAGAGGC
TCTCTCAGCAGGCATGGAGGTACATGCCTGTAACTCCAACACCCGGGGTG
TGGAGGCAGGAGGATCTAGAATTCAAGGCCCATGAGACCCCATCTCTAAC
AAAACAACAACCAAACCAAACCAAGCCCCCCCCCAAAAAAAAACCTTCCT
CACTTAAAACTAAAGTCAAATGGCATCATCACTTATAAAAAAAATTATCT
ACTGTGTCTTATACTGCAAAAAACATAAGGAAAAAACAGTATTTTCCATT
TCTTCCAAAGCTTAGCTTCAATGAGGGGCAAGGCATGATAATTCCTAAGA
CTCTGCTGACCAAATCTGCCCAAGAGTTCTGTTTCCTCTACATAAAATAC
CACAAATCTAAAGTGAGGGACTGCATCAACTTAAAGAACCATAATTTATG
ATTTAAAAACAGCCCACTAGGGCCTGGGAAAACAGCCAGTGCAAGCCCCC
AAGCTTCATCAGAGGGAGAAAAAGGACATCTCATTCAATCCTCATCTGCA
GACAGAATTTCAAAAATCACAATTTTGCCTTACAGAGACCGAGTTTATAT
GCCATTACCACTATTAAATTTCAGAAAG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAACCAA
AAAACAAAATAAAATCCCTGGAATCTACAAAGGTGACCCCAGAGACCACT
CCCAGTAATGGAGGATACAGAGCCTGAACCAGCCATATTCTATAACCAGG
TGACTTACAGTGGCAGGGTTGCAACATGAACACAGCTAATGCCCTTAGAC
CTACAACCTATCCTGCCAGAAAGATGTGATGGGGCAATGGAGGAGAACTA
ATGTGTCCAACTAATGGGTGGTCTAATTCGAAGCCCATAAGATAGGAAGC
CCATGCCCAACACTGCCTGGATCATCAAGAACTGGAGTCTGGATAGCCAA
GGACTTAGGGTAGGAAAAATAAGTCTATGAAATGATCCCTAGTGGTAATC
TGCTATACTCAAAGATTGAGGCCTAGTTCAATAGTCATCAGAGACACTTT
CCCTATAAGCTGATTAGAACCACTGTATAGACTGACAGCCATGCCTGAGA
CGCCTAGAGAGCCCAAATTGCAGTACTCCATTAGGCCCCTCCTCCTCTAT
ATCTATGATCCCCCTGCCACAACGTCAGAGGAAGAACTTATAATAGCCTG
TGCGGTTCCAAGACACTATTTATAATACCTCCCCCCTCACTTTCCATATA
TGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no098_o12.b1 MSMg01no098_o12.b1 CHROMAT_FILE:
MSMg01no098_o12.b1 PHD_FILE: MSMg01no098_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:09 2005
         (507 letters)



>mm_chr9_88315705_88316609
          Length = 905

 Score =  946 bits (489), Expect = 0.0
 Identities = 501/505 (99%), Gaps = 2/505 (0%)
 Strand = Plus / Plus

                                                                       
Query: 3   gggttcagtgactcccaccagaacaagaaggagaaaatataagcatgggaaccaaaacca 62
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 203 gggttcagtgactcccaccagaacacgaaggagaaaatataagcatgggaaccaaaacca 262

                                                                       
Query: 63  gaggctctctcagcaggcatggaggtacatgcctgtaactccaacacccggggtgtggag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gaggctctctcagcaggcatggaggtacatgcctgtaactccaacacccggggtgtggag 322

                                                                       
Query: 123 gcaggaggatctagaattcaaggcccatgagaccccatctctaacaaaacaacaaccaaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcaggaggatctagaattcaaggcccatgagaccccatctctaacaaaacaacaaccaaa 382

                                                                       
Query: 183 ccaaaccaagcccccccccaaaaaaaaaccttcctcacttaaaactaaagtcaaatggca 242
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 383 ccaaaccaagcccccccccaaaaaaaa-ccttcctcacttaaaactaaagtcaaatggca 441

                                                                       
Query: 243 tcatcacttataaaaaaaattatctactgtgtcttatactgcaaaaaacataaggaaaaa 302
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcatcacttataaaaaaa-ttatctactgtgtcttatactgcaaaaaacataaggaaaaa 500

                                                                       
Query: 303 acagtattttccatttcttccaaagcttagcttcaatgaggggcaaggcatgataattcc 362
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 acagtattttccatttcttccaaagcttagcttcaatgagggggaaggcatgataattcc 560

                                                                       
Query: 363 taagactctgctgaccaaatctgcccaagagttctgtttcctctacataaaataccacaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagactctgctgaccaaatctgcccaagagttctgtttcctctacataaaataccacaa 620

                                                                       
Query: 423 atctaaagtgagggactgcatcaacttaaagaaccataatttatgatttaaaaacagccc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atctaaagtgagggactgcatcaacttaaagaaccataatttatgatttaaaaacagccc 680

                                    
Query: 483 actagggcctgggaaaacagccagt 507
           |||||||||||||||||||||||||
Sbjct: 681 actagggcctgggaaaacagccagt 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 905
Length adjustment: 10
Effective length of query: 497
Effective length of database: 895
Effective search space:   444815
Effective search space used:   444815
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)